damaris-script-library/Scripts/Saturation_Recovery_with_Solid_Echo_Detection/satrec2_exp.py

# -*- coding: iso-8859-1 -*-

TXEnableDelay = 2e-6
TXEnableValue = 0b0001	# TTL line blanking RF amplifier (bit 0)
TXPulseValue  = 0b0010	# TTL line triggering RF pulses  (bit 1)
ADCSensitivity = 2	# voltage span for ADC

def experiment(): # saturation-recovery with soild-echo detection

  # set up acquisition parameters:
    pars = {}
    pars['P90'] = 2.3e-6	# 90-degree pulse length (s)
    pars['SF'] = 46.7e6		# spectrometer frequency (Hz)
    pars['O1'] = 5.6e3		# offset from SF (Hz)
    pars['SW'] = 10e6		# spectral window (Hz)
    pars['SI'] = 1*1024		# number of acquisition points
    pars['NS'] = 16		# number of scans
    pars['DS'] = 0		# number of dummy scans
    pars['TAU'] = 1		# delay for recovery (s)
    pars['D3'] = 20e-6		# echo delay (s)
    pars['D4'] = 0			# echo pre-aquisition delay (s)
    pars['PHA'] = -30		# receiver phase (degree)
     # -*- these ain't variable: -*-
    pars['NECH'] = 40		# number of saturation pulses
    pars['D1'] = 100e-3		# starting interval in saturation sequence (s) 
    pars['D2'] = 1e-4		# end interval in saturation sequence (s) 
    pars['DATADIR'] = '/home/fprak/Students/'	# data directory
    pars['OUTFILE'] = None			# output file name

  # specify a variable parameter (optional):
    pars['VAR_PAR'] = 'TAU'	# variable parameter name (a string)   
    start = 1e-4		# starting value
    stop = 1e-0			# end value
    steps = 10			# number of values
    log_scale = True		# log scale flag 
    stag_range = True		# staggered range flag

  # check parameters for safety: 
    if pars['PHA'] < 0:
        pars['PHA'] = 360 + pars['PHA']

    if pars['P90'] > 20e-6:
        raise Exception("pulse too long!!!")

    # check whether a variable parameter is named: 
    var_key = pars.get('VAR_PAR')
    if var_key == 'P90' and (start > 20e-6 or stop > 20e-6):
        raise Exception("Pulse too long!!!")

    if pars['NS']%8 != 0:
        pars['NS'] = int(round(pars['NS'] / 8) + 1) * 8 
        print 'Number of scans changed to ',pars['NS'],' due to phase cycling'

    if pars['D1'] < pars['D2']:
        raise Exception("D1 must be greater than D2!")

    sat_length = sum(log_range(pars['D1'],pars['D2'],pars['NECH']))
    if sat_length > 1.:
        raise Exception("saturation sequence too long!!!")   

    # start the experiment:
    if var_key: 
        # this is an arrayed experiment:
        if log_scale:
            array = log_range(start, stop, steps)
        else:
            array = lin_range(start, stop, steps)  

        if stag_range:
            array = staggered_range(array, size = 2)

        # estimate the experiment time:
        if var_key == 'TAU':
            seconds = ((sat_length + pars['D3']*2) * steps + sum(array)) * (pars['NS'] + pars['DS'])
        elif var_key == 'D3':
            seconds = ((sat_length + pars['TAU']) * steps + sum(array)*2) * (pars['NS'] + pars['DS'])
        else:
            seconds = (sat_length + pars['TAU'] + pars['D3']*2) * steps * (pars['NS']+ pars['DS']) 
        m, s = divmod(seconds, 60)
        h, m = divmod(m, 60)
        print '%s%02d:%02d:%02d' % ('Experiment time estimated: ', h, m, s)

        # loop for a variable parameter:
        for index, pars[var_key] in enumerate(array):
            print 'Arrayed experiment for '+var_key+': run = '+str(index+1)+\
                             ' out of '+str(array.size)+': value = '+str(pars[var_key])
            # loop for accumulation:
            for run in xrange(pars['NS']+pars['DS']):
                yield satrec2_experiment(pars, run) 
            synchronize()
    else:
       # estimate the experiment time:
        seconds = (sat_length + pars['TAU'] + pars['D3']*2) * (pars['NS']+ pars['DS']) 
        m, s = divmod(seconds, 60)
        h, m = divmod(m, 60)
        print '%s%02d:%02d:%02d' % ('Experiment time estimated: ', h, m, s)

        # loop for accumulation:
        for run in xrange(pars['NS']+pars['DS']):
            yield satrec2_experiment(pars, run)


# the pulse program: 

def satrec2_experiment(pars, run):
    e=Experiment()

    dummy_scans = pars.get('DS')
    if dummy_scans:
        run -= dummy_scans

    pars['PROG'] = 'satrec2_experiment'

    # phase lists:
    pars['PH1'] = [  0] 					# saturation pulses
    pars['PH3'] = [ 0, 180,   0, 180, 90, 270,  90, 270]	# 1st 90-degree pulse
    pars['PH4'] = [90,  90, 270, 270,  0,   0, 180, 180]	# 2nd 90-degree pulse
    pars['PH2'] = [ 0, 180,   0, 180, 90, 270,  90, 270]	# receiver

    # read in variables:
    P90 = pars['P90']
    SF =  pars['SF']
    O1 =  pars['O1']
    NECH = pars['NECH']
    D1 =  pars['D1']
    D2 =  pars['D2']
    D3 =  pars['D3']
    D4 =  pars['D4']
    TAU = pars['TAU']
    PH1 = pars['PH1'][run%len(pars['PH1'])]
    PH3 = pars['PH3'][run%len(pars['PH3'])]
    PH4 = pars['PH4'][run%len(pars['PH4'])]
    PH2 = pars['PH2'][run%len(pars['PH2'])]
    PHA = pars['PHA']

    # set variable delay list for saturation pulses: 
    vdlist = log_range(D2, D1, NECH-1)

    # set sampling parameters:
    SI = pars['SI']
    SW = pars['SW']
    while SW <= 10e6 and SI < 256*1024:
        SI *= 2
        SW *= 2

    # the pulse sequence: 

    # saturation:
    e.set_frequency(SF+O1, phase=PH1)			# set frequency and phase for saturation pulses
    e.ttl_pulse(TXEnableDelay, value=TXEnableValue)	# enable RF amplifier
    e.ttl_pulse(P90, value=TXEnableValue|TXPulseValue)	# apply 90-degree pulse
    for delay in vdlist[::-1]:
        e.wait(delay-P90-TXEnableDelay)			# wait for next saturation pulse
        e.ttl_pulse(TXEnableDelay, value=TXEnableValue)	# enable RF amplifier
        e.ttl_pulse(P90, value=TXEnableValue|TXPulseValue) # apply 90-degree pulse

    # recovery:
    e.wait(TAU)						# wait for tau
    e.set_phase(PH3)					# set phase for next pulse
     
    # echo detection:
    e.ttl_pulse(TXEnableDelay, value=TXEnableValue)	# enable RF amplifier
    e.ttl_pulse(P90, value=TXEnableValue|TXPulseValue)	# apply 90-degree pulse
    e.wait(D3-P90-TXEnableDelay)			# echo delay
    e.set_phase(PH4)					# set phase for next pulse
    e.ttl_pulse(TXEnableDelay, value=TXEnableValue)	# enable RF amplifier
    e.ttl_pulse(P90, value=TXEnableValue|TXPulseValue)	# apply 90-degree pulse 
    e.set_phase(PHA)					# set phase for receiver
    e.wait(D3-P90/2+D4)					# echo delay    
    e.record(SI, SW, sensitivity=ADCSensitivity)	# acquisition

    # write experiment attributes:  
    for key in pars.keys():
        e.set_description(key, pars[key])	# pulse sequence parameters
    e.set_description('run', run)		# current scan
    e.set_description('rec_phase', -PH2)	# current receiver phase

    return e