IPKM/damaris-script-library
IPKM/damaris-script-library
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Merge pull request 'better phase cycles for STE (3+4 pulse)' (#4) from ste_phasecycle into main

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Reviewed-on: #4
This commit is contained in:
Markus Rosenstihl 2023-02-08 21:13:49 +00:00
commit a68212d183
4 changed files with 22 additions and 28 deletions
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10
Scripts/Spin_Alignment/spinal_exp.py
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@ -103,11 +103,11 @@ def spinal_experiment(pars, run):
pars['PROG'] = 'spinal_experiment' pars['PROG'] = 'spinal_experiment'
# 8-step phase cycle (1-14 modifided to deal with T1-recovery and extended for Re/Im imbalance) # 8-step phase cycle (Schaefer et al. J Magn Res A 115 (1995))
pars['PH1'] = [0, 270, 0, 270, 180, 90, 180, 90] # 1st (90-degree) pulse pars['PH1'] = [ 0, 0, 180, 180, 90, 90, 270, 270] # 1st (90-degree) pulse
pars['PH3'] = [90, 180, 90, 180, 90, 180, 90, 180] # 2nd (90-degree) pulse pars['PH3'] = [90, 270, 90, 270, 180, 90, 180, 90] # 2nd (90-degree) pulse
pars['PH4'] = [90, 90, 270, 270, 0, 0, 180, 180] # 3rd (90-degree) pulse pars['PH4'] = [90] # 3rd (90-degree) pulse
pars['PH2'] = [0, 180, 180, 0, 90, 270, 270, 90] # receiver pars['PH2'] = [90, 270] # receiver
# read in variables: # read in variables:
P90 = pars['P90'] P90 = pars['P90']

15
Scripts/Spin_Alignment_Four_Pulses/spinal4pulses_exp.py
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@ -104,12 +104,12 @@ def spinal4pulses_experiment(pars, run):
pars['PROG'] = 'spinal4pulses_experiment' pars['PROG'] = 'spinal4pulses_experiment'
# 8-step phase cycle (1-14 modifided to deal with T1-recovery and extended for Re/Im imbalance) # 8-step phase cycle (Schaefer et al. J Magn Res A 115 (1995))
pars['PH1'] = [0, 270, 0, 270, 180, 90, 180, 90] # 1st (90-degree) pulse pars['PH1'] = [0, 0, 180, 180, 90, 90, 270, 270] # 1st (90-degree) pulse
pars['PH3'] = [90, 180, 90, 180, 90, 180, 90, 180] # 2nd (90-degree) pulse pars['PH3'] = [90, 270, 90, 270, 180, 90, 180, 90] # 2nd (90-degree) pulse
pars['PH4'] = [90, 90, 270, 270, 0, 0, 180, 180] # 3rd (90-degree) pulse pars['PH4'] = [90] # 3rd (90-degree) pulse
pars['PH5'] = [90, 90, 90, 90, 180, 180, 180, 180] # 3rd (90-degree) pulse pars['PH5'] = [90] * 8 + [270] * 8
pars['PH2'] = [0, 180, 180, 0, 90, 270, 270, 90] # receiver pars['PH2'] = [90, 270] # receiver
# read in variables: # read in variables:
P90 = pars['P90'] P90 = pars['P90']
@ -128,9 +128,6 @@ def spinal4pulses_experiment(pars, run):
PH2 = pars['PH2'][run%len(pars['PH2'])] PH2 = pars['PH2'][run%len(pars['PH2'])]
PHA = pars['PHA'] PHA = pars['PHA']
if (run/8)%2 != 0:
PH5 += 180
# set sampling parameters: # set sampling parameters:
SI = pars['SI'] SI = pars['SI']
SW = pars['SW'] SW = pars['SW']

10
Scripts/Zeeman_Order/zeeman_exp.py
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@ -101,11 +101,11 @@ def zeeman_experiment(pars, run):
pars['PROG'] = 'zeeman_experiment' pars['PROG'] = 'zeeman_experiment'
# 8-step phase cycle (1-21 modifided to deal with T1-recovery and extended for Re/Im imbalance) # 8-step phase cycle (Schaefer et al. J Magn Res A 115 (1995))
pars['PH1'] = [0, 270, 0, 270, 180, 90, 180, 90] # 1st (90-degree) pulse pars['PH1'] = [0, 0, 180, 180, 90, 90, 270, 270] # 1st (90-degree) pulse
pars['PH3'] = [0, 90, 0, 90, 0, 90, 0, 90] # 2nd (90-degree) pulse pars['PH3'] = [0, 180, 0, 180, 90, 180, 90, 180] # 2nd (90-degree) pulse
pars['PH4'] = [0, 0, 180, 180, 270, 270, 90, 90] # 3rd (90-degree) pulse pars['PH4'] = [90] # 3rd (90-degree) pulse
pars['PH2'] = [0, 180, 180, 0, 90, 270, 270, 90] # receiver pars['PH2'] = [90, 270] # receiver
# read in variables: # read in variables:
P90 = pars['P90'] P90 = pars['P90']

15
Scripts/Zeeman_Order_Four_Pulses/zeeman4pulses_exp.py
View File

@ -102,12 +102,12 @@ def zeeman4pulses_experiment(pars, run):
pars['PROG'] = 'zeeman4pulses_experiment' pars['PROG'] = 'zeeman4pulses_experiment'
# ok 8-step phase cycle (1-21 modifided to deal with T1-recovery and extended for Re/Im imbalance) # ok 8-step phase cycle (Schaefer et al. J Magn Res A 115 (1995))
pars['PH1'] = [0, 270, 0, 270, 180, 90, 180, 90] # 1st (90-degree) pulse pars['PH1'] = [0, 0, 180, 180, 90, 90, 270, 270] # 1st (90-degree) pulse
pars['PH3'] = [0, 90, 0, 90, 0, 90, 0, 90] # 2nd (90-degree) pulse pars['PH3'] = [0, 180, 0, 180, 90, 180, 90, 270] # 2nd (90-degree) pulse
pars['PH4'] = [0, 0, 180, 180, 270, 270, 90, 90] # 3rd (90-degree) pulse pars['PH4'] = [0] # 3rd (90-degree) pulse
pars['PH5'] = [90, 90, 90, 90, 180, 180, 180, 180] # 3rd (90-degree) pulse pars['PH5'] = [90] * 8 + [270] * 8
pars['PH2'] = [0, 180, 180, 0, 90, 270, 270, 90] # receiver pars['PH2'] = [90, 270] # receiver
# read in variables: # read in variables:
@ -125,9 +125,6 @@ def zeeman4pulses_experiment(pars, run):
PH2 = pars['PH2'][run%len(pars['PH2'])] PH2 = pars['PH2'][run%len(pars['PH2'])]
PHA = pars['PHA'] PHA = pars['PHA']
if (run/8)%2 != 0:
PH5 += 180
# set sampling parameters: # set sampling parameters:
SI = pars['SI'] SI = pars['SI']
SW = pars['SW'] SW = pars['SW']