# -*- coding: iso-8859-1 -*-

from numpy import *
from scipy.signal import *
from scipy.optimize import *
from os import path, rename

def result():

    measurement = MeasurementResult('Magnetization')

    measurement_range = [0.0, 10e-6]
    measurement_ranging = False

    suffix = '' 	# output file name's suffix and...
    counter = 1		# counter for arrayed experiments
    var_key = ''	# variable parameter name

    # loop over the incoming results: 
    for timesignal in results:
        if not isinstance(timesignal,ADC_Result): 
            continue

        # read experiment parameters:
        pars = timesignal.get_description_dictionary()

        # ---------------- digital filter ------------------ 
             
        # get actual sampling rate of timesignal:
        sampling_rate = timesignal.get_sampling_rate()

        # get user-defined spectrum width:
        spec_width = pars['SW']
        
        # specify cutoff frequency, in relative units:
        cutoff = spec_width / sampling_rate
                
        if cutoff < 1: # no filter applied otherwise

            # number of filter's coefficients:
            numtaps = 29
            
            # use firwin to create a lowpass FIR filter:
            fir_coeff = firwin(numtaps, cutoff)
            
            # downsize x according to user-defined spectral window:
            skip = int(sampling_rate / spec_width)
            timesignal.x = timesignal.x[::skip]
            
            for i in range(2):
                # apply the filter to ith channel:
                timesignal.y[i] = lfilter(fir_coeff, 1.0, timesignal.y[i])

                # zeroize first N-1 "corrupted" samples:
                timesignal.y[i][:numtaps-1] = 0.0

                # circular left shift of y:
                timesignal.y[i] = roll(timesignal.y[i], -(numtaps-1))    

                # downsize y to user-defined number of samples (SI):
                timesignal.y[i] = timesignal.y[i][::skip]

            # update the sampling_rate attribute of the signal's:
            timesignal.set_sampling_rate(spec_width)

        # ----------------------------------------------------

        # rotate timesignal according to current receiver's phase:
        timesignal.phase(pars['rec_phase'])

        # provide timesignal to the display tab:
        data['Current scan'] = timesignal

        # accumulate...
        if not locals().get('accu'):
            accu = Accumulation()

        # skip dummy scans, if any:
        if pars['run'] < 0: continue

        # add up:
        accu += timesignal

        # provide accumulation to the display tab:
        data['Accumulation'] = accu

        # check how many scans are done:
        if accu.n == pars['NS']: # accumulation is complete

            # make a copy:
            echo = accu + 0

            # compute the initial phase of FID:
            phi0 = arctan2(echo.y[1][0], echo.y[0][0]) * 180 / pi
            if not 'ref' in locals(): ref = phi0   
            print 'phi0 = ', phi0

            # rotate FID to maximize y[0][0]:     
            #echo.phase(-phi0) 

            # do FFT:
            echo.exp_window(line_broadening=10)
            spectrum = echo.fft(samples=2*pars['SI'])

            # try zero-order phase correction: 
            spectrum.phase(-phi0)

            # provide spectrum to the display tab:
            data['Spectrum'] = spectrum

            # check whether it is an arrayed experiment: 
            var_key = pars.get('VAR_PAR')
            if var_key:
                # get variable parameter's value:
                var_value = pars.get(var_key)

                # provide signal recorded with this var_value to the display tab:
                data['Accumulation'+"/"+var_key+"=%e"%(var_value)] = accu                

                # measure signal intensity vs. var_value:
                if measurement_ranging == True:
                   [start, stop] = accu.get_sampling_rate() * array(measurement_range)
                   measurement[var_value] = sum(accu.y[0][int(start):int(stop)]) 
                   
                else:
                   measurement[var_value] = sum(accu.y[0][0:31])

                # provide measurement to the display tab:
                data[measurement.get_title()] = measurement

                # update the file name suffix:
                suffix = '_' + str(counter)
                counter += 1

            # save accu if required:
            outfile = pars.get('OUTFILE')
            if outfile: 
                datadir = pars.get('DATADIR')

                # write raw data in Simpson format:
                filename = datadir+outfile+suffix+'.dat'
                if path.exists(filename):
                    rename(filename, datadir+'~'+outfile+suffix+'.dat')
                accu.write_to_simpson(filename)

                # write raw data in Tecmag format:
                # filename = datadir+outfile+'.tnt'
                # accu.write_to_tecmag(filename, nrecords=20)

               # write parameters in a text file:
                filename = datadir+outfile+suffix+'.par' 
                if path.exists(filename):
                    rename(filename, datadir+'~'+outfile+suffix+'.par')

                fileobject = open(filename, 'w')
                for key in sorted(pars.iterkeys()):
                    if key=='run': continue
                    if key=='rec_phase': continue
                    fileobject.write('%s%s%s'%(key,'=', pars[key]))
                    fileobject.write('\n')
                fileobject.close()

            # reset accumulation:
            del accu


    if var_key == 'D2':
        # KWW fit:
        xdata = measurement.get_xdata()
        ydata = measurement.get_ydata()
        [amplitude, rate, beta] = fitfunc(xdata, ydata)
        print '%s%02g' % ('Amplitude = ', amplitude)
        print '%s%02g' % ('T2 [s] = ', 1./rate)
        print '%s%02g' % ('Beta = ', beta)

        # update display for the fit:
        measurement.y = func([amplitude, rate, beta], xdata)
        data[measurement.get_title()] = measurement

# the fitting procedure:
def fitfunc(xdata, ydata): 

    # initialize variable parameters:
    try: 
        # solve Az = b:
        A = array((ones(xdata.size/2), xdata[0:xdata.size/2]))    
        b = log(abs(ydata[0:xdata.size/2]))     
        z = linalg.lstsq(transpose(A), b)
        amplitude = exp(z[0][0])
        rate = -z[0][1]
    except:
        amplitude = abs(ydata[0])
        rate = 1./(xdata[-1] - xdata[0])
    beta = 1
    p0 = [amplitude, rate, beta]

    # run least-squares optimization:
    plsq = leastsq(residuals, p0, args=(xdata, ydata))

    return plsq[0] # best-fit parameters

def residuals(p, xdata, ydata):
    return ydata - func(p, xdata)

# here is the function to fit:
def func(p, xdata):
    return p[0]*exp(-(p[1]*xdata)**p[2])


pass