Updated requirements.txt

requirements.txt

@@ -1,110 +1,129 @@
+anyio==3.6.2
 argon2-cffi==21.3.0
 argon2-cffi-bindings==21.2.0
-asttokens==2.0.5
+asttokens==2.1.0
-attrs==21.4.0
+attrs==22.1.0
 backcall==0.2.0
 beautifulsoup4==4.11.1
 biopython==1.79
-bleach==5.0.0
+bleach==5.0.1
-certifi==2021.10.8
+certifi==2022.9.24
-cffi==1.15.0
+cffi==1.15.1
-charset-normalizer==2.0.12
+charset-normalizer==2.1.1
-cloudpickle==2.0.0
+click==8.1.3
+cloudpickle==2.2.0
+contourpy==1.0.6
 cycler==0.11.0
-dask==2022.4.1
+dask==2022.10.2
-debugpy==1.6.0
+debugpy==1.6.3
 decorator==5.1.1
 defusedxml==0.7.1
+dill==0.3.6
 entrypoints==0.4
-executing==0.8.3
+executing==1.2.0
-fastjsonschema==2.15.3
+fasteners==0.18
-fonttools==4.32.0
+fastjsonschema==2.16.2
-fsspec==2022.3.0
+fonttools==4.38.0
-greenlet==1.1.2
+fsspec==2022.10.0
-GridDataFormats==0.7.0
+greenlet==2.0.0
-gsd==2.5.2
+GridDataFormats==1.0.1
-idna==3.3
+gsd==2.6.0
-ipydatawidgets==4.2.0
+idna==3.4
-ipykernel==6.13.0
+importlib-metadata==5.0.0
-ipython==8.2.0
+ipydatawidgets==4.3.2
+ipykernel==6.17.0
+ipython==8.6.0
 ipython-genutils==0.2.0
 ipyvolume==0.5.2
 ipywebrtc==0.6.0
-ipywidgets==7.7.0
+ipywidgets==8.0.2
 jedi==0.18.1
-Jinja2==3.1.1
+Jinja2==3.1.2
-joblib==1.1.0
+joblib==1.2.0
-jsonschema==4.4.0
+jsonschema==4.17.0
 jupyter==1.0.0
-jupyter-client==7.2.2
+jupyter-console==6.4.4
-jupyter-console==6.4.3
+jupyter-contrib-core==0.4.0
-jupyter-contrib-core==0.3.3
 jupyter-contrib-nbextensions==0.5.1
-jupyter-core==4.10.0
 jupyter-highlight-selected-word==0.2.0
 jupyter-latex-envs==1.4.6
-jupyter-nbextensions-configurator==0.4.1
+jupyter-nbextensions-configurator==0.5.0
+jupyter-server==1.21.0
+jupyter_client==7.4.4
+jupyter_core==4.11.2
 jupyterlab-pygments==0.2.2
-jupyterlab-widgets==1.1.0
+jupyterlab-widgets==3.0.3
-kiwisolver==1.4.2
+kiwisolver==1.4.4
-locket==0.2.1
+locket==1.0.0
-lxml==4.8.0
+lxml==4.9.1
 MarkupSafe==2.1.1
-matplotlib==3.5.1
+matplotlib==3.6.2
-matplotlib-inline==0.1.3
+matplotlib-inline==0.1.6
-MDAnalysis==2.1.0
+MDAnalysis==2.3.0
-mistune==0.8.4
+mdevaluate==22.11
-mmtf-python==1.1.2
+mistune==2.0.4
-mrcfile==1.3.0
+mmtf-python==1.1.3
-msgpack==1.0.3
+mrcfile==1.4.3
-nbclient==0.6.0
+msgpack==1.0.4
-nbconvert==6.5.0
+multiprocess==0.70.14
-nbformat==5.3.0
+nbclassic==0.4.8
-nest-asyncio==1.5.5
+nbclient==0.7.0
-networkx==2.8
+nbconvert==7.2.3
-notebook==6.4.11
+nbformat==5.7.0
-numpy==1.22.3
+nest-asyncio==1.5.6
+networkx==2.8.8
+notebook==6.5.2
+notebook_shim==0.2.2
+numpy==1.23.4
 packaging==21.3
-pandas==1.4.2
+pandas==1.5.1
 pandocfilters==1.5.0
 parso==0.8.3
-partd==1.2.0
+partd==1.3.0
+pathos==0.3.0
 pexpect==4.8.0
 pickleshare==0.7.5
-Pillow==9.1.0
+Pillow==9.3.0
-prometheus-client==0.14.1
+pox==0.3.2
-prompt-toolkit==3.0.29
+ppft==1.7.6.6
-psutil==5.9.0
+prometheus-client==0.15.0
-psycopg2-binary==2.9.3
+prompt-toolkit==3.0.31
+psutil==5.9.3
+psycopg2-binary==2.9.5
 ptyprocess==0.7.0
 pure-eval==0.2.2
 pycparser==2.21
-Pygments==2.11.2
+Pygments==2.13.0
-pyparsing==3.0.8
+pyparsing==3.0.9
-pyrsistent==0.18.1
+pyrsistent==0.19.2
 python-dateutil==2.8.2
-pythreejs==2.3.0
+pythreejs==2.4.1
-pytz==2022.1
+pytz==2022.6
 PyYAML==6.0
-pyzmq==22.3.0
+pyzmq==24.0.1
-qtconsole==5.3.0
+qtconsole==5.4.0
-QtPy==2.0.1
+QtPy==2.2.1
-requests==2.27.1
+requests==2.28.1
-scipy==1.8.0
+scipy==1.9.3
 Send2Trash==1.8.0
 six==1.16.0
+sniffio==1.3.0
 soupsieve==2.3.2.post1
-SQLAlchemy==1.4.35
+SQLAlchemy==1.4.42
-stack-data==0.2.0
+stack-data==0.6.0
-terminado==0.13.3
+store==0.2
+terminado==0.17.0
 threadpoolctl==3.1.0
-tinycss2==1.1.1
+tinycss2==1.2.1
-toolz==0.11.2
+toolz==0.12.0
-tornado==6.1
+tornado==6.2
-tqdm==4.64.0
+tqdm==4.64.1
-traitlets==5.1.1
+traitlets==5.5.0
 traittypes==0.2.1
-urllib3==1.26.9
+tudplot==0.1
+urllib3==1.26.12
 wcwidth==0.2.5
 webencodings==0.5.1
-widgetsnbextension==3.6.0
+websocket-client==1.4.1
+widgetsnbextension==4.0.3
+zipp==3.10.0