diff --git a/requirements.txt b/requirements.txt
index 65ab9af..30294a4 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,201 +1,10 @@
-alabaster==0.7.12
-anyio==3.6.2
-argon2-cffi==21.3.0
-argon2-cffi-bindings==21.2.0
-arrow==1.2.3
-astroid==2.12.12
-atomicwrites==1.4.1
-attrs==22.1.0
-autopep8==1.6.0
-Babel==2.11.0
-backcall==0.2.0
-beautifulsoup4==4.11.1
-binaryornot==0.4.4
-biopython==1.79
-black==22.10.0
-bleach==5.0.1
-certifi==2022.9.24
-cffi==1.15.1
-chardet==5.0.0
-charset-normalizer==2.1.1
-click==8.1.3
-cloudpickle==2.2.0
-contourpy==1.0.6
-cookiecutter==2.1.1
-cryptography==38.0.3
-cycler==0.11.0
-dask==2022.10.2
-debugpy==1.6.3
-decorator==5.1.1
-defusedxml==0.7.1
-diff-match-patch==20200713
-dill==0.3.6
-docstring-to-markdown==0.10
-docutils==0.19
-entrypoints==0.4
-fasteners==0.18
-fastjsonschema==2.16.2
-flake8==5.0.4
-fonttools==4.38.0
-fsspec==2022.10.0
-greenlet==2.0.0.post0
-GridDataFormats==1.0.1
-gsd==2.6.1
-idna==3.4
-imagesize==1.4.1
-importlib-metadata==5.0.0
-inflection==0.5.1
-intervaltree==3.1.0
-ipydatawidgets==4.3.2
-ipykernel==6.17.0
-ipython==7.34.0
-ipython-genutils==0.2.0
-ipyvolume==0.5.2
-ipywebrtc==0.6.0
-ipywidgets==8.0.2
-isort==5.10.1
-jaraco.classes==3.2.3
-jedi==0.18.1
-jeepney==0.8.0
-jellyfish==0.9.0
-Jinja2==3.1.2
-jinja2-time==0.2.0
-joblib==1.2.0
-jsonschema==4.17.0
-jupyter==1.0.0
-jupyter-console==6.4.4
-jupyter-contrib-core==0.4.0
-jupyter-contrib-nbextensions==0.5.1
-jupyter-highlight-selected-word==0.2.0
-jupyter-latex-envs==1.4.6
-jupyter-nbextensions-configurator==0.5.0
-jupyter-server==1.21.0
-jupyter_client==7.4.4
-jupyter_core==4.11.2
-jupyterlab-pygments==0.2.2
-jupyterlab-widgets==3.0.3
-keyring==23.11.0
-kiwisolver==1.4.4
-lazy-object-proxy==1.8.0
-locket==1.0.0
-lxml==4.9.1
-MarkupSafe==2.1.1
-matplotlib==3.6.2
-matplotlib-inline==0.1.6
-mccabe==0.7.0
-MDAnalysis==2.3.0
-mistune==2.0.4
-mmtf-python==1.1.3
-more-itertools==9.0.0
-mrcfile==1.4.3
-msgpack==1.0.4
-multiprocess==0.70.14
-mypy-extensions==0.4.3
-nbclassic==0.4.8
-nbclient==0.7.0
-nbconvert==7.2.3
-nbformat==5.7.0
-nest-asyncio==1.5.6
-networkx==2.8.8
-notebook==6.5.2
-notebook_shim==0.2.2
-numpy==1.23.4
-numpydoc==1.5.0
-packaging==21.3
-pandas==1.5.1
-pandocfilters==1.5.0
-parso==0.8.3
-partd==1.3.0
-pathos==0.3.0
-pathspec==0.10.1
-pexpect==4.8.0
-pickleshare==0.7.5
-Pillow==9.3.0
-platformdirs==2.5.2
-pluggy==1.0.0
-pox==0.3.2
-ppft==1.7.6.6
-prometheus-client==0.15.0
-prompt-toolkit==3.0.32
-psutil==5.9.3
-psycopg2-binary==2.9.5
-ptyprocess==0.7.0
-pycodestyle==2.9.1
-pycparser==2.21
-pydocstyle==6.1.1
-pyflakes==2.5.0
-Pygments==2.13.0
-pylint==2.15.5
-pylint-venv==2.3.0
-pyls-spyder==0.4.0
-pyparsing==3.0.9
-PyQt5==5.15.7
-PyQt5-Qt5==5.15.2
-PyQt5-sip==12.11.0
-PyQtWebEngine==5.15.6
-PyQtWebEngine-Qt5==5.15.2
-pyrsistent==0.19.2
-python-dateutil==2.8.2
-python-lsp-black==1.2.1
-python-lsp-jsonrpc==1.0.0
-python-lsp-server==1.6.0
-python-slugify==6.1.2
-pythreejs==2.4.1
-pytoolconfig==1.2.2
-pytz==2022.6
-pyxdg==0.28
-PyYAML==6.0
-pyzmq==24.0.1
-QDarkStyle==3.0.3
-qstylizer==0.2.2
-QtAwesome==1.2.1
-qtconsole==5.4.0
-QtPy==2.2.1
-requests==2.28.1
-rope==1.4.0
-Rtree==1.0.1
-scipy==1.9.3
-SecretStorage==3.3.3
-Send2Trash==1.8.0
-six==1.16.0
-sniffio==1.3.0
-snowballstemmer==2.2.0
-sortedcontainers==2.4.0
-soupsieve==2.3.2.post1
-Sphinx==5.3.0
-sphinxcontrib-applehelp==1.0.2
-sphinxcontrib-devhelp==1.0.2
-sphinxcontrib-htmlhelp==2.0.0
-sphinxcontrib-jsmath==1.0.1
-sphinxcontrib-qthelp==1.0.3
-sphinxcontrib-serializinghtml==1.1.5
-spyder==5.4.0
-spyder-kernels==2.4.0
-SQLAlchemy==1.4.43
-terminado==0.17.0
-text-unidecode==1.3
-textdistance==4.5.0
-threadpoolctl==3.1.0
-three-merge==0.1.1
-tinycss2==1.2.1
-toml==0.10.2
-tomli==2.0.1
-tomlkit==0.11.6
-toolz==0.12.0
-tornado==6.2
-tqdm==4.64.1
-traitlets==5.5.0
-traittypes==0.2.1
-typing_extensions==4.4.0
-ujson==5.5.0
-urllib3==1.26.12
-watchdog==2.1.9
-wcwidth==0.2.5
-webencodings==0.5.1
-websocket-client==1.4.2
-whatthepatch==1.0.2
-widgetsnbextension==4.0.3
-wrapt==1.14.1
-wurlitzer==3.0.2
-yapf==0.32.0
-zipp==3.10.0
+jupyter
+spyder
+mdanalysis
+pathos
+pandas
+dask
+sqlalchemy
+psycopg2-binary
+ipyvlume
+jupyter_contrib_nbextensions