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			e124506d10
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			fix/nojump
		
	
	| Author | SHA1 | Date | |
|---|---|---|---|
|  | 9ff3badab1 | ||
|  | 492098fe01 | 
| @@ -149,32 +149,21 @@ def nojump(frame: CoordinateFrame, usecache: bool = True) -> CoordinateFrame: | |||||||
|             i0 = 0 |             i0 = 0 | ||||||
|             delta = 0 |             delta = 0 | ||||||
|  |  | ||||||
|         delta = ( |         delta = (delta | ||||||
|             delta |             + np.vstack( | ||||||
|             + np.array( |                 [m[i0 : abstep + 1].sum(axis=0) for m in reader.nojump_matrices] | ||||||
|                 np.vstack( |             ).T) | ||||||
|                     [m[i0 : abstep + 1].sum(axis=0) for m in reader.nojump_matrices] |  | ||||||
|                 ).T |  | ||||||
|             ) |  | ||||||
|             @ frame.box |  | ||||||
|         ) |  | ||||||
|  |  | ||||||
|         reader._nojump_cache[abstep] = delta |         reader._nojump_cache[abstep] = delta | ||||||
|         while len(reader._nojump_cache) > NOJUMP_CACHESIZE: |         while len(reader._nojump_cache) > NOJUMP_CACHESIZE: | ||||||
|             reader._nojump_cache.popitem(last=False) |             reader._nojump_cache.popitem(last=False) | ||||||
|         delta = delta[selection, :] |  | ||||||
|     else: |     else: | ||||||
|         delta = ( |         delta = np.vstack( | ||||||
|             np.array( |                 [m[: frame.step + 1, selection].sum(axis=0) for m in reader.nojump_matrices] | ||||||
|                 np.vstack( |  | ||||||
|                     [ |  | ||||||
|                         m[: frame.step + 1, selection].sum(axis=0) |  | ||||||
|                         for m in reader.nojump_matrices |  | ||||||
|                     ] |  | ||||||
|                 ).T |                 ).T | ||||||
|             ) |      | ||||||
|             @ frame.box |     delta = delta[selection, :] | ||||||
|         ) |     delta = np.array(delta @ frame.box) | ||||||
|     return frame - delta |     return frame - delta | ||||||
|  |  | ||||||
|  |  | ||||||
|   | |||||||
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