IPKM/nmreval
13
2
Fork 0
Code Issues 34 Pull Requests Actions Packages Projects 2 Wiki Activity

remoce matplotlib import

Browse Source
This commit is contained in:
Dominik Demuth 2023-04-16 14:33:05 +02:00
parent 48861c3f80
commit bb3d5ac58b
1 changed files with 63 additions and 64 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

127
src/nmreval/io/fcbatchreader.py
View File

@ -2,7 +2,6 @@ from __future__ import annotations
import pathlib import pathlib
from matplotlib import pyplot as plt
# import matplotlib.pyplot as plt # import matplotlib.pyplot as plt
from scipy.optimize import curve_fit from scipy.optimize import curve_fit
import numpy as np import numpy as np
@ -219,16 +218,16 @@ class FCReader:
np.savetxt(fit_path.joinpath(save_name), np.c_[xplot, yplot], np.savetxt(fit_path.joinpath(save_name), np.c_[xplot, yplot],
header=header+'\t'.join([f'{p}+/-{err}' for p, err in zip(p0, perr)])) header=header+'\t'.join([f'{p}+/-{err}' for p, err in zip(p0, perr)]))
if save_fig: # if save_fig:
fig, ax = plt.subplots() # fig, ax = plt.subplots()
ax.set_xlabel('t / s') # ax.set_xlabel('t / s')
ax.set_ylabel('M') # ax.set_ylabel('M')
axheader = f'T1: {p0[2]:.4g}(+/-{perr[2]:.4g}) beta: {p0[3]:.4g}(+/-{perr[3]:.4g})' # axheader = f'T1: {p0[2]:.4g}(+/-{perr[2]:.4g}) beta: {p0[3]:.4g}(+/-{perr[3]:.4g})'
ax.set_title(f'f = {k:.4g} Hz\n{axheader}') # ax.set_title(f'f = {k:.4g} Hz\n{axheader}')
ax.semilogx(v.x, v.y, 'o') # ax.semilogx(v.x, v.y, 'o')
ax.semilogx(xplot, yplot, '-') # ax.semilogx(xplot, yplot, '-')
fig.savefig(image_path.joinpath(save_name).with_suffix('.png')) # fig.savefig(image_path.joinpath(save_name).with_suffix('.png'))
plt.close(fig) # plt.close(fig)
freqs = np.asanyarray(freqs) freqs = np.asanyarray(freqs)
params = np.asanyarray(params) params = np.asanyarray(params)
@ -278,16 +277,16 @@ class FCReader:
np.savetxt(save_path.joinpath(f'fitparameter_{key}.dat'), parameter, np.savetxt(save_path.joinpath(f'fitparameter_{key}.dat'), parameter,
header=f'{key}\nM0\tM0_err\tOff\tOff_err\tT1\tT1_err\tbeta\tbeta_err') header=f'{key}\nM0\tM0_err\tOff\tOff_err\tT1\tT1_err\tbeta\tbeta_err')
@staticmethod # @staticmethod
def _plot_parameter(key, param, fig_mag, fig_t1, fig_beta): # def _plot_parameter(key, param, fig_mag, fig_t1, fig_beta):
ax_mag = fig_mag.get_axes()[0] # ax_mag = fig_mag.get_axes()[0]
ax_t1 = fig_t1.get_axes()[0] # ax_t1 = fig_t1.get_axes()[0]
ax_beta = fig_beta.get_axes()[0] # ax_beta = fig_beta.get_axes()[0]
#
pl, = ax_mag.plot(param[:, 0], param[:, 1], 'o', label=key) # pl, = ax_mag.plot(param[:, 0], param[:, 1], 'o', label=key)
ax_mag.plot(param[:, 0], param[:, 3], 's', color=pl.get_color()) # ax_mag.plot(param[:, 0], param[:, 3], 's', color=pl.get_color())
ax_t1.plot(param[:, 0], param[:, 5], 'o', label=key) # ax_t1.plot(param[:, 0], param[:, 5], 'o', label=key)
ax_beta.plot(param[:, 0], param[:, 7], 'o', label=key) # ax_beta.plot(param[:, 0], param[:, 7], 'o', label=key)
@staticmethod @staticmethod
def _save_parameter_plot(path, kind, fig_mag, fig_t1, fig_beta): def _save_parameter_plot(path, kind, fig_mag, fig_t1, fig_beta):
@ -316,49 +315,49 @@ class FCReader:
# plt.close(fig_beta) # plt.close(fig_beta)
# plt.close(fig_t1) # plt.close(fig_t1)
def plot_parameter(self, path, kind): # def plot_parameter(self, path, kind):
path = pathlib.Path(path) # path = pathlib.Path(path)
path.mkdir(parents=True, exist_ok=True) # path.mkdir(parents=True, exist_ok=True)
#
fig_mag, ax_mag = plt.subplots() # fig_mag, ax_mag = plt.subplots()
fig_t1, ax_t1 = plt.subplots() # fig_t1, ax_t1 = plt.subplots()
fig_beta, ax_beta = plt.subplots() # fig_beta, ax_beta = plt.subplots()
#
if kind == 'temp': # if kind == 'temp':
_params = self.t_params # _params = self.t_params
else: # else:
_params = self.f_params # _params = self.f_params
#
save_path = path.joinpath(kind) # save_path = path.joinpath(kind)
if not save_path.exists(): # if not save_path.exists():
save_path.mkdir(parents=True) # save_path.mkdir(parents=True)
#
for key, par in _params.items(): # for key, par in _params.items():
pl, = ax_mag.plot(par[:, 0], par[:, 1], 'o', label=key) # pl, = ax_mag.plot(par[:, 0], par[:, 1], 'o', label=key)
ax_mag.plot(par[:, 0], par[:, 3], 's', color=pl.get_color()) # ax_mag.plot(par[:, 0], par[:, 3], 's', color=pl.get_color())
ax_t1.plot(par[:, 0], par[:, 5], 'o', label=key) # ax_t1.plot(par[:, 0], par[:, 5], 'o', label=key)
ax_beta.plot(par[:, 0], par[:, 7], 'o', label=key) # ax_beta.plot(par[:, 0], par[:, 7], 'o', label=key)
#
for a in [ax_mag, ax_t1, ax_beta]: # for a in [ax_mag, ax_t1, ax_beta]:
if kind == 'freq': # if kind == 'freq':
a.legend(loc='upper left', bbox_to_anchor=(1, 1), ncol=2) # a.legend(loc='upper left', bbox_to_anchor=(1, 1), ncol=2)
a.set_xlabel('T / K') # a.set_xlabel('T / K')
else: # else:
a.set_xscale('log') # a.set_xscale('log')
a.legend(loc='upper left', bbox_to_anchor=(1, 1)) # a.legend(loc='upper left', bbox_to_anchor=(1, 1))
a.set_xlabel('f / Hz') # a.set_xlabel('f / Hz')
#
ax_t1.set_yscale('log') # ax_t1.set_yscale('log')
ax_t1.set_ylabel('T1 / s') # ax_t1.set_ylabel('T1 / s')
ax_beta.set_ylabel('beta') # ax_beta.set_ylabel('beta')
ax_mag.set_ylabel('M0 (squares), Offset (circles)') # ax_mag.set_ylabel('M0 (squares), Offset (circles)')
#
fig_beta.savefig(path.joinpath(f'beta_{kind}.png'), bbox_inches="tight") # fig_beta.savefig(path.joinpath(f'beta_{kind}.png'), bbox_inches="tight")
fig_mag.savefig(path.joinpath(f'mag_{kind}.png'), bbox_inches="tight") # fig_mag.savefig(path.joinpath(f'mag_{kind}.png'), bbox_inches="tight")
fig_t1.savefig(path.joinpath(f't1_{kind}.png'), bbox_inches="tight") # fig_t1.savefig(path.joinpath(f't1_{kind}.png'), bbox_inches="tight")
plt.close(fig_mag) # plt.close(fig_mag)
plt.close(fig_beta) # plt.close(fig_beta)
plt.close(fig_t1) # plt.close(fig_t1)
def get_parameter(self, parameter='all', kind='freq', path=None, write=True, plot=True): def get_parameter(self, parameter='all', kind='freq', path=None, write=True, plot=True):
param_list = [] param_list = []