Merge commit 'e1053513ced8'
This commit is contained in:
Markus Rosenstihl
commit
ca018cbdc8
@ -91,6 +91,15 @@ class Experiment:
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self.rf_sources = rf_sources
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self.rf_gates = rf_gates
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#for tracking the experiment length:
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#because loops are possible we need to track the length for each loop level
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self.total_time=[]
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self.total_time.append(0.0)
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#and we need to know the number of iterations of the loops to multiply the state.
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self.loop_iterations=[]
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self.loop_iterations.append(1)
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# Commands -------------------------------------------------------------------------------------
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## Creates a state with ttl signals of duration *length*.
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@ -119,6 +128,8 @@ class Experiment:
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self.state_list.append(StateSimple(length, \
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'<ttlout value="0x%06x"/>' % the_value))
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self.total_time[-1] += length
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## Same as ttl_pulse, but no *channel* keyword
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def ttls(self, length = None, value = None):
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"""
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@ -132,9 +143,11 @@ class Experiment:
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s_content = '<ttlout value="0x%06x"/>' % the_value
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if length is not None:
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self.state_list.append(StateSimple(length, s_content))
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self.total_time[-1] += length
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else:
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self.state_list.append(s_content)
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def rf_pulse(self, length=None, phase=0, source=0):
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"""
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make an rf pulse, including gating and phase switching
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@ -157,6 +170,7 @@ class Experiment:
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This must be closed with state_end()
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"""
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self.state_list.append('<state time="%s">\n' % repr(time))
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self.total_time[-1] += time
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## End of *state_start*
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def state_end(self):
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@ -185,6 +199,8 @@ class Experiment:
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else:
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self.state_list.append(StateSimple(time))
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self.total_time[-1] += time
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## Records data with given number of samples, sampling-frequency frequency and sensitivity
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# @param samples Number of samples to record
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# @param frequency Sampling frequency
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@ -247,6 +263,7 @@ class Experiment:
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if timelength is None:
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timelength = samples / float(frequency)#*1.01
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self.state_list.append(StateSimple(timelength, s_content))
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self.total_time[-1] += timelength
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## Create a loop on the pulse programmer. Loop contents can not change inside the loop.
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# @params iterations Number of loop iterations
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@ -265,6 +282,9 @@ class Experiment:
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self.list_stack.append(self.state_list)
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self.state_list = l
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self.total_time.append(0.0)
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self.loop_iterations.append(iterations)
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## End loop state
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def loop_end(self):
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"""
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@ -273,6 +293,10 @@ class Experiment:
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# (This line could probably be guarded by a mutex)
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self.state_list = self.list_stack.pop(-1)
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looptime=self.total_time.pop(-1)
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loopiterations=self.loop_iterations.pop(-1)
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self.total_time[-1] += looptime*loopiterations
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## Set the frequency and phase of the frequency source.
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## This state needs 2us.
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# @param frequency New frequency in Hz
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@ -292,6 +316,8 @@ class Experiment:
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s_content += '<ttlout value="0x%06x"/>' % ttls
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self.state_list.append(StateSimple(2e-6, s_content))
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self.total_time[-1] += 2e-6
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## Creates a, possibly shaped, pulsed gradient.
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# @param dac_value DAC value to set
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# @param length Duration of the state, minimum length is 42*90ns=3.78us (default)
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@ -331,21 +357,27 @@ class Experiment:
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if form == 'rec': # shape==None --> rectangular gradients
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s_content = '<ttlout value="%s"/><analogout id="1" dac_value="%i"/>' % (trigger, dac_value)
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self.state_list.append(StateSimple(length, s_content))
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self.total_time[-1] += length
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if not is_seq:
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s_content = '<analogout id="1" dac_value="0"/>'
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self.state_list.append(StateSimple(42*9e-8, s_content))
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self.total_time[-1] += 42*9e-8
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elif form == 'sin2':
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# sin**2 shape
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for t in t_steps:
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dac = int (dac_value*numpy.sin(numpy.pi/length*t)**2)
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s_content = '<ttlout value="%s"/><analogout id="1" dac_value="%i"/>' % (trigger, dac)
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self.state_list.append(StateSimple(resolution, s_content))
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# set it back to zero
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s_content = '<ttlout value="%s"/><analogout id="1" dac_value="0"/>' % (trigger)
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self.state_list.append(StateSimple(resolution, s_content))
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self.total_time[-1] += resolution*(len(t_steps)+1)
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elif form == 'sin':
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# sin shape
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for t in t_steps:
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@ -355,6 +387,8 @@ class Experiment:
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# set it back to zero
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s_content = '<ttlout value="%s"/><analogout id="1" dac_value="0"/>' % (trigger)
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self.state_list.append(StateSimple(resolution, s_content))
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self.total_time[-1] += resolution*(len(t_steps)+1)
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else: # don't know what to do
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raise SyntaxError , "form is unknown: %s"%form
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@ -385,11 +419,16 @@ class Experiment:
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s_content = '<analogout id="%d" dac_value="%i"/><ttlout value="0x%06x"/>' \
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% (dac_id, dac_value, ttls)
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self.state_list.append(StateSimple(length, s_content))
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self.total_time[-1] += length
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if not is_seq:
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s_content = '<analogout id="%d" dac_value="0"/><ttlout value="0x%06x"/>' \
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% (dac_id, ttls)
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self.state_list.append(StateSimple(42*9e-8, s_content))
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self.total_time[-1] += 42*9e-8
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## sets the phase of the frequency source.
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## This state needs 0.5us, though the phase switching time is dependent on the frequency source
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# @param phase New phase to set
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@ -409,6 +448,8 @@ class Experiment:
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s_content += '<ttlout value="%d"/>' % ttls
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self.state_list.append(StateSimple(0.5e-6, s_content))
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self.total_time[-1] += 0.5e-6
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## sets a description which is carried via the back end result
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## file to the result script in the front end. In the result script
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## you can extract the description with get_description(key)
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@ -435,6 +476,8 @@ class Experiment:
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self.state_list.append(StateSimple(1e-6, '<ttlout value="0xf000"/>'))
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self.state_list.append(StateSimple(1e-6, '<ttlout value="0x8000"/>'))
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self.total_time[-1] += 2e-6
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# / Commands -----------------------------------------------------------------------------------
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@ -509,6 +552,16 @@ class Experiment:
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"""
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return '<?xml version="1.0" encoding="ISO-8859-1"?>\n<quit/>'
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def get_length(self):
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timelength = 0.0
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#calculate the correct timelength also for unclosed loops, if there is no unclosed loop
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#the timelength of this experiment is self.total_time[-1].
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for i in range(len(self.total_time)):
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timelength += self.total_time[i]
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timelength *= self.loop_iterations[i]
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return timelength
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class Quit(Experiment):
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def write_xml_string(self):
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@ -529,8 +582,7 @@ def self_test():
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e.ttl_pulse(1e-6/3, None, 7) # val = 7
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if True:
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e.loop_start(30)
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e.set_pfg(dac_value=1024, is_seq = True)
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e.set_pfg_wt(dac_value=2048)
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e.set_pfg(dac_value=1024, length=5e-6, is_seq = True, shape=('rec', 42*9e-8))
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e.loop_start(400)
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e.set_phase(270, ttls = 32)
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e.loop_end()
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@ -551,5 +603,7 @@ def self_test():
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e.set_pts_local()
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print e.write_xml_string()
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print e.get_length()
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if __name__ == '__main__':
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self_test()
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@ -53,9 +53,11 @@ matplotlib.rcParams[ "axes.formatter.limits" ] = "-3,3"
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if matplotlib.rcParams[ "backend" ] == "GTK":
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from matplotlib.backends.backend_gtk import FigureCanvasGTK as FigureCanvas
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max_points_to_display = 0 # no limit
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elif matplotlib.rcParams[ "backend" ] == "GTKCairo":
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from matplotlib.backends.backend_gtkcairo import FigureCanvasGTKCairo as FigureCanvas
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max_points_to_display = 1 << 14 # cairo cannot render longer paths than 18???
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else:
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# default
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@ -181,7 +183,7 @@ class DamarisGUI:
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# my notebook
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self.main_notebook = self.xml_gui.get_widget( "main_notebook" )
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self.log = LogWindow( self.xml_gui )
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self.log = LogWindow( self.xml_gui , self)
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self.sw = ScriptWidgets( self.xml_gui )
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@ -196,6 +198,9 @@ class DamarisGUI:
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self.lockfile = LockFile() # = os.path.expanduser("~/.damaris.lock")
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self.id = None
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#to stop queued experiments
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self.stop_experiment_flag = threading.Event()
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exp_script = u""
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if exp_script_filename is not None and exp_script_filename != "":
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self.sw.exp_script_filename = exp_script_filename[ : ]
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@ -277,11 +282,14 @@ class DamarisGUI:
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self.toolbar_run_button.emit("clicked")
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gtk.main( )
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gtk.gdk.threads_leave( )
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self.si = None
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self.sw = None
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self.config = None
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self.xml_gui = None
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# event handling: the real acitons in gui programming
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# first global events
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def quit_event( self, widget, data=None ):
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@ -449,10 +457,13 @@ class DamarisGUI:
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self.log.textbuffer.create_mark( "lastdumped", self.log.textbuffer.get_end_iter( ), left_gravity=True )
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loop_run=0
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#user shorter interval because this blocks user events from the GUI
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interval = 0.1
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self.stop_experiment_flag.clear()
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self.id = self.lockfile.add_experiment()
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while not self.lockfile.am_i_next():
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time.sleep(interval)
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self.stop_experiment_flag.wait(interval)
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while gtk.events_pending():
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gtk.main_iteration(False)
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if loop_run > 1:
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@ -460,6 +471,19 @@ class DamarisGUI:
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loop_run = 0
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loop_run += interval
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if self.stop_experiment_flag.isSet():
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#Experiment has been stopped, clean up and leave
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self.experiment_script_statusbar_label.set_text("Experiment stopped")
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self.state = DamarisGUI.Edit_State
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self.sw.enable_editing( )
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self.toolbar_run_button.set_sensitive( True )
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self.toolbar_stop_button.set_sensitive( False )
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self.toolbar_pause_button.set_sensitive( False )
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self.toolbar_pause_button.set_active( False )
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#delete experiment from queue so that next experiment may start
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self.lockfile.del_experiment(self.id)
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return
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# start experiment
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try:
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self.spool_dir = os.path.abspath( actual_config[ "spool_dir" ] )
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@ -504,6 +528,8 @@ class DamarisGUI:
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self.toolbar_stop_button.set_sensitive( False )
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self.toolbar_pause_button.set_sensitive( False )
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self.toolbar_pause_button.set_active( False )
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#delete Experiment from queue
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self.lockfile.del_experiment(self.id)
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return
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# switch to grapics
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@ -541,6 +567,33 @@ class DamarisGUI:
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r = self.si.data.get( "__recentresult", -1 ) + 1
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b = self.si.data.get( "__resultsinadvance", -1 ) + 1
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e = self.si.data.get( "__recentexperiment", -1 ) + 1
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experimentstarttime = self.si.data.get( "__experimentstarted", 0 )
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expectedexperimentruntime = self.si.data.get( "__totalexperimentlength", 0 )
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experimentsfinishedtime = 0.0
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for i in range(0, b):
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experimentsfinishedtime += self.si.data.get("__experimentlengths", {}).get(i, 0.0)
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experimentruntime = time.time() - experimentstarttime
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experimenttimetext = ""
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if experimentstarttime > 0 and expectedexperimentruntime > 0:
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runtimemin, runtimesec = divmod(math.floor(experimentruntime), 60)
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runtimehours, runtimemin = divmod(runtimemin, 60)
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experimenttimetext += " ({:02d}:{:02d}:{:02d} / ".format(int(runtimehours), int(runtimemin), int(runtimesec))
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expectedmin, expectedsec = divmod(math.ceil(expectedexperimentruntime), 60)
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expectedhours, expectedmin = divmod(expectedmin, 60)
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experimenttimetext += "{:02d}:{:02d}:{:02d})".format(int(expectedhours), int(expectedmin), int(expectedsec))
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backendtimetext = ""
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if experimentsfinishedtime > 0:
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finexperimmin, finexperimsec = divmod(round(experimentsfinishedtime), 60)
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finexperimhours, finexperimmin = divmod(finexperimmin, 60)
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backendtimetext = " ({:02d}:{:02d}:{:02d})".format(int(finexperimhours), int(finexperimmin), int(finexperimsec))
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e_text = None
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r_text = None
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b_text = None
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@ -560,6 +613,7 @@ class DamarisGUI:
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else:
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#print self.si.back_driver.get_messages()
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e_text = "Experiment Script Running (%d)" % e
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e_text += experimenttimetext
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if self.si.res_handling is not None:
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if not self.si.res_handling.isAlive( ):
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@ -588,6 +642,7 @@ class DamarisGUI:
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b_text = "Backend Running"
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if b != 0:
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b_text += " (%d)" % b
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b_text += backendtimetext
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if self.dump_thread is not None:
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if self.dump_thread.isAlive( ):
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@ -656,7 +711,7 @@ class DamarisGUI:
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# keep data to display but throw away everything else
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self.si = None
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# delete locak file so that other experiment can start
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# delete lock file so that other experiment can start
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self.lockfile.del_experiment(self.id)
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return False
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@ -904,6 +959,7 @@ class DamarisGUI:
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def stop_experiment( self, widget, data=None ):
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if self.state in [ DamarisGUI.Run_State, DamarisGUI.Pause_State ]:
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self.stop_experiment_flag.set()
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if self.si is None:
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return
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still_running = filter( None, [ self.si.exp_handling, self.si.res_handling, self.si.back_driver ] )
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@ -990,7 +1046,8 @@ class DamarisGUI:
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# check generic debian location
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self.doc_urls[ "Python DAMARIS" ] = "file:///usr/share/doc/python-damaris/html/index.html"
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else:
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self.doc_urls[ "Python DAMARIS" ] = "https://element.fkp.physik.tu-darmstadt.de/damaris_cms/index.php?id=a-not-so-short-tutorial-on-damaris"
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self.doc_urls[ "Python DAMARIS" ] = "https://element.fkp.physik.tu-darmstadt.de/damaris_cms/index.php?id=documentation"
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self.doc_browser = None
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@ -1060,10 +1117,12 @@ class LogWindow:
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writes messages to the log window
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"""
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def __init__( self, xml_gui ):
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def __init__( self, xml_gui, damaris_gui ):
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self.xml_gui = xml_gui
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self.damaris_gui = damaris_gui
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self.textview = self.xml_gui.get_widget( "messages_textview" )
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self.textview.connect( "key-press-event", self.textview_keypress)
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self.textbuffer = self.textview.get_buffer( )
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self.logstream = log
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self.logstream.gui_log = self
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@ -1087,6 +1146,14 @@ class LogWindow:
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self.textview.scroll_to_mark( self.textbuffer.get_insert( ), 0.1 )
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gtk.gdk.threads_leave( )
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def textview_keypress( self, widget, event, data=None ):
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if event.state & gtk.gdk.CONTROL_MASK != 0:
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if event.keyval == gtk.gdk.keyval_from_name("f"):
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self.damaris_gui.sw.search(None, None)
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return True
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return False
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def __del__( self ):
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self.logstream.gui_log = None
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self.logstream = None
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@ -1125,13 +1192,22 @@ class ScriptWidgets:
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self.data_handling_textbuffer.set_language(langpython)
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self.data_handling_textbuffer.set_highlight_syntax(True)
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fontdesc = pango.FontDescription("monospace")
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self.experiment_script_textview.set_buffer( self.experiment_script_textbuffer )
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self.experiment_script_textview.set_show_line_numbers(True)
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self.experiment_script_textview.set_auto_indent(True)
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self.experiment_script_textview.set_insert_spaces_instead_of_tabs(True)
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self.experiment_script_textview.set_tab_width(4)
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self.experiment_script_textview.set_smart_home_end(True)
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self.experiment_script_textview.modify_font(fontdesc)
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self.data_handling_textview.set_buffer( self.data_handling_textbuffer )
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self.data_handling_textview.set_show_line_numbers(True)
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self.data_handling_textview.set_auto_indent(True)
|
||||
self.data_handling_textview.set_insert_spaces_instead_of_tabs(True)
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self.data_handling_textview.set_tab_width(4)
|
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self.data_handling_textview.set_smart_home_end(True)
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self.data_handling_textview.modify_font(fontdesc)
|
||||
|
||||
keywords = """for if else elif in print try finally except global lambda not or pass def
|
||||
class import from as return yield while continue break assert None True False AccumulatedValue
|
||||
@ -1455,10 +1531,62 @@ get_job_id get_description set_description get_xdata get_ydata set_xdate set_yda
|
||||
elif event.keyval == gtk.gdk.keyval_from_name("f"):
|
||||
self.search(None, None)
|
||||
return True
|
||||
return 0
|
||||
return False
|
||||
|
||||
#Handle Backspace (delete more than one space on line beginning)
|
||||
if event.keyval == 0xFF08:
|
||||
textbuffer = widget.get_buffer( )
|
||||
|
||||
if textbuffer.get_has_selection():
|
||||
return False
|
||||
|
||||
cursor_mark = textbuffer.get_insert( )
|
||||
cursor_iter = textbuffer.get_iter_at_mark( cursor_mark )
|
||||
|
||||
linestart_iter = cursor_iter.copy( )
|
||||
linestart_iter.set_line_offset( 0 )
|
||||
|
||||
linebegin = textbuffer.get_text( linestart_iter, cursor_iter ).expandtabs(4)
|
||||
|
||||
if linebegin.isspace() and len(linebegin) > 0:
|
||||
linebegin = u' ' * int((len( linebegin ) - 1) / 4) * 4
|
||||
textbuffer.delete( linestart_iter, cursor_iter )
|
||||
textbuffer.insert( linestart_iter, linebegin )
|
||||
return True
|
||||
|
||||
elif event.keyval == 0xFF0D:
|
||||
textbuffer = widget.get_buffer( )
|
||||
|
||||
if textbuffer.get_has_selection():
|
||||
return False
|
||||
|
||||
cursor_mark = textbuffer.get_insert( )
|
||||
cursor_iter = textbuffer.get_iter_at_mark( cursor_mark )
|
||||
|
||||
lastchar_iter = cursor_iter.copy()
|
||||
lastchar = lastchar_iter.backward_char( )
|
||||
|
||||
if not lastchar_iter.get_char( ) == u":":
|
||||
return False
|
||||
|
||||
linestart_iter = cursor_iter.copy( )
|
||||
linestart_iter.set_line_offset( 0 )
|
||||
spaceend_iter = linestart_iter.copy( )
|
||||
while (not spaceend_iter.ends_line( ) and not spaceend_iter.is_end( ) and spaceend_iter.get_char( ).isspace( )):
|
||||
spaceend_iter.forward_char( )
|
||||
linebegin = textbuffer.get_text( linestart_iter, spaceend_iter ).expandtabs(4)
|
||||
indent_length = int((int(len(linebegin)/4)+1)*4)
|
||||
|
||||
intext = u"\n" + (u" " * indent_length)
|
||||
|
||||
textbuffer.insert(cursor_iter, intext)
|
||||
widget.scroll_to_mark( cursor_mark, 0.0, 0 )
|
||||
|
||||
return True
|
||||
|
||||
|
||||
#self.textviews_moved(widget)
|
||||
return 0
|
||||
return False
|
||||
|
||||
def load_file_as_unicode( self, script_filename ):
|
||||
script_file = file( script_filename, "rU" )
|
||||
@ -3209,7 +3337,7 @@ class ScriptInterface:
|
||||
self.exp_writer = self.res_reader = self.back_driver = None
|
||||
if self.backend_executable is not None and self.backend_executable != "":
|
||||
self.back_driver = BackendDriver.BackendDriver( self.backend_executable, spool_dir, clear_jobs,
|
||||
clear_results)
|
||||
clear_results )
|
||||
if self.exp_script:
|
||||
self.exp_writer = self.back_driver.get_exp_writer( )
|
||||
if self.res_script:
|
||||
@ -3229,6 +3357,7 @@ class ScriptInterface:
|
||||
self.data = DataPool( )
|
||||
|
||||
def runScripts( self ):
|
||||
|
||||
try:
|
||||
# get script engines
|
||||
self.exp_handling = self.res_handling = None
|
||||
|
||||
@ -66,6 +66,7 @@ class ExperimentHandling(threading.Thread):
|
||||
self.traceback=traceback_file.getvalue()
|
||||
traceback_file=None
|
||||
return
|
||||
|
||||
while exp_iterator is not None and not self.quit_flag.isSet():
|
||||
# get next experiment from script
|
||||
try:
|
||||
@ -86,6 +87,21 @@ class ExperimentHandling(threading.Thread):
|
||||
if isinstance(job, Experiment):
|
||||
if self.data is not None:
|
||||
self.data["__recentexperiment"]=job.job_id+0
|
||||
|
||||
# track time when experiment is started. This is placed after executing the script
|
||||
# and getting the iterator so that time for initializing devices etc. is not included
|
||||
if "__experimentstarted" not in self.data:
|
||||
self.data["__experimentstarted"] = time.time()
|
||||
# track time of experiments in queue, the total time and for each experiment:
|
||||
if "__totalexperimentlength" not in self.data:
|
||||
self.data["__totalexperimentlength"] = 0.0
|
||||
if "__experimentlengths" not in self.data:
|
||||
self.data["__experimentlengths"] = {}
|
||||
|
||||
experimentlength = job.get_length()
|
||||
self.data["__experimentlengths"][job.job_id+0] = experimentlength
|
||||
self.data["__totalexperimentlength"] += experimentlength
|
||||
|
||||
# relax for a short time
|
||||
if "__resultsinadvance" in self.data and self.data["__resultsinadvance"]+100<job.job_id:
|
||||
self.quit_flag.wait(0.05)
|
||||
|
||||
Loading…
Reference in New Issue
Block a user