add more documentation: API doc

doc/api_reference.rst

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+#############
+API Reference
+#############
+
+This page provides an auto-generated reference of all DAMARIS classes, functions, and modules.
+It is built from docstrings using Sphinx autodoc and autosummary.
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Modules:
+
+   damaris/data
+   damaris/experiments
+   damaris/gui
+   damaris/tools
+
+
+Data Module
+===========
+
+The data module contains result types, data handling, and signal processing classes.
+
+.. autosummary::
+   :toctree: _autosummary
+   :recursive:
+
+   damaris.data.ADC_Result
+   damaris.data.Accumulation
+   damaris.data.DamarisFFT
+   damaris.data.DataPool
+   damaris.data.Drawable
+   damaris.data.Errorable
+   damaris.data.Error_Result
+   damaris.data.MeasurementResult
+   damaris.data.Persistance
+   damaris.data.Resultable
+   damaris.data.Signalpath
+   damaris.data.Temperature
+   damaris.data.autophase
+
+
+Experiments Module
+==================
+
+The experiments module contains the Experiment class and related utilities for defining pulse sequences.
+
+.. autosummary::
+   :toctree: _autosummary
+   :recursive:
+
+   damaris.experiments.Experiment
+   damaris.experiments.DurationEstimator
+   damaris.experiments.dac
+
+
+GUI Module
+==========
+
+The GUI module contains the graphical interface, backend driver, and experiment/result handling.
+
+.. autosummary::
+   :toctree: _autosummary
+   :recursive:
+
+   damaris.gui.BackendDriver
+   damaris.gui.DamarisGUI
+   damaris.gui.ExperimentHandling
+   damaris.gui.ExperimentWriter
+   damaris.gui.ResultHandling
+   damaris.gui.ResultReader
+   damaris.gui.TemperatureMonitor
+   damaris.gui.logging_utils
+
+
+Tools Module
+============
+
+The tools module contains hardware driver interfaces and utility functions.
+
+.. autosummary::
+   :toctree: _autosummary
+   :recursive:
+
+   damaris.tools.eurotherm
+   damaris.tools.flow_control
+   damaris.tools.goniometer
+   damaris.tools.lakeshore
+   damaris.tools.ranges
+   damaris.tools.signal
+   damaris.tools.temperature
+   damaris.tools.temperature_simulator