change parameter via CLI options

main.cpp

@@ -1,5 +1,4 @@
 
-
 #include "utils/io.h"
 #include "simulation/sims.h"
 #include "motions/base.h"
@@ -25,6 +24,10 @@ int main (const int argc, char *argv[]) {
 
     std::unordered_map parameter { read_parameter(args.parameter_file) };
 
+    for (const auto& [key, value]: args.optional) {
+        parameter[key] = value;
+    }
+
     std::random_device rd;
     std::mt19937_64 rng(rd());
 

test.py

@@ -17,10 +17,7 @@ def run_sims(taus, ste: bool = True, spectrum: bool = False, exec_file: str = '.
 
         arguments += ['BimodalAngle']
 
-        # arguments += ['-TAU', '1']
-
-        with pathlib.Path(config_file).open('a') as f:
-            f.write(f'tau={tau}\n')
+        arguments += ['-TAU', f'{tau}']
 
         subprocess.run(arguments)
 
@@ -71,7 +68,7 @@ def post_process_spectrum(taus, apod, tpulse):
 
 
 def post_process_ste(taus):
-    tevo = np.linspace(1e-6, 120e-6, num=8)
+    tevo = np.linspace(1e-6, 120e-6, num=121)
 
     for i, tau in enumerate(taus):
         try:
@@ -211,7 +208,7 @@ def ste(x, m0, t, beta, finfty):
 
 
 if __name__ == '__main__':
-    tau_values = np.geomspace(1e-2, 1e-6, num=1)   # if num=1, tau is first value
+    tau_values = np.geomspace(1e-2, 1e2, num=2)   # if num=1, tau is first value
 
     # parameter for spectrum simulations
     lb = 2e3

utils/io.cpp

@@ -7,6 +7,7 @@
 #include <fstream>
 #include <iostream>
 #include <algorithm>
+#include <complex>
 #include <vector>
 #include <iomanip>
 #include <unordered_map>
@@ -16,29 +17,56 @@
 
 
 
-Arguments parse_args(const int argc, char **argv) {
+Arguments parse_args(const int argc, char* argv[]) {
     if (argc < 3) {
         throw std::runtime_error("Not enough arguments: missing parameter file");
     }
 
     Arguments args;
 
-    for (int i=1; i<argc; i++) {
-        if (std::string arg = argv[i]; arg[0] == '-') {
-            if (arg == "--ste") {
-                args.ste = true;
-            } else if (arg == "--spectrum") {
+    const std::vector<std::string> input_args(argv + 1, argv + argc);
+
+    for (auto it = input_args.begin();  it != input_args.end(); ++it) {
+        std::cout << *it << std::endl;
+        if (it->at(0) == '-') {
+
+            if (*it == "--spectrum") {
                 args.spectrum = true;
-            } else {
-                throw std::runtime_error("Unrecognized option: " + arg);
+                std::cout << "spectrum: " << args.spectrum << std::endl;
+                continue;
             }
-        } else if (args.parameter_file.empty()) {
-            args.parameter_file = arg;
-        } else if (args.motion_type.empty()) {
-            args.motion_type = arg;
-        } else {
-            throw std::invalid_argument("Too many options for parameter file");
+
+            if (*it == "--ste") {
+                args.ste = true;
+                std::cout << "ste: " << args.ste << std::endl;
+                continue;
             }
+
+            std::string stripped_arg;
+            if (it->size() > 2 && it->at(0) == '-' && it->at(1) == '-') {
+                stripped_arg = it->substr(2, it->size());
+            } else if (it->size() > 1 && it->at(0) == '-') {
+                stripped_arg = it->substr(1, it->size());
+            }
+            std::transform(stripped_arg.begin(), stripped_arg.end(), stripped_arg.begin(), [](unsigned char c) { return std::tolower(c); });
+            const auto stripped_value = std::stod(*(++it), nullptr);
+            args.optional[stripped_arg] = stripped_value;
+            continue;
+        }
+
+        if (args.parameter_file.empty()) {
+            std::cout << *it << " is parameter_file" << std::endl;
+            args.parameter_file = *it;
+            continue;
+        }
+
+        if (args.motion_type.empty()) {
+            std::cout << *it << " is motion model" << std::endl;
+            args.motion_type = *it;
+            continue;
+        }
+
+        throw std::invalid_argument("too many positional arguments");
     }
 
     if (args.parameter_file.empty()) {
@@ -48,7 +76,6 @@ Arguments parse_args(const int argc, char **argv) {
     if (args.motion_type.empty()) {
         throw std::invalid_argument("Missing motion model");
     }
-
     return args;
 }
 

utils/io.h

@@ -16,7 +16,7 @@ struct Arguments {
     std::unordered_map<std::string, double> optional;
 };
 
-Arguments parse_args(int argc, char **argv);
+Arguments parse_args(int argc, char* argv[]);
 
 std::unordered_map<std::string, double> read_parameter(const std::filesystem::path&);