nmreval/src/gui_qt/data/signaledit/phase_dialog.py

from __future__ import annotations

from pyqtgraph import mkPen
import numpy as np
from numpy import pi
from numpy.fft import fft, fftshift, fftfreq

from nmreval.data import FID, Spectrum
from ...lib.pg_objects import PlotItem, LogInfiniteLine
from nmreval.lib.importer import find_models
from nmreval.math import apodization as apodization
from nmreval.utils.text import convert

from ...Qt import QtCore, QtWidgets, QtGui
from ..._py.apod_dialog import Ui_ApodEdit
from ...lib.forms import FormWidget


class QPreviewDialog(QtWidgets.QDialog, Ui_ApodEdit):
    finished = QtCore.pyqtSignal(str, tuple)

    def __init__(self, parent=None):
        super().__init__(parent=parent)

        self.setupUi(self)

        self.data = []
        self.graphs = []
        self._tmp_data_bl = []
        self._tmp_data_zf = []
        self._tmp_data_ls = []
        self._tmp_data_ap = []
        self._tmp_data_ph = []

        self.pvt_line = LogInfiniteLine(pos=0, movable=True)
        self.freq_graph.addItem(self.pvt_line)
        self.pvt_line.sigPositionChanged.connect(self.move_line)

        self.ls_lineedit.hide()

        self.apods = find_models(apodization)

        self.apodcombobox.blockSignals(True)
        for ap in self.apods:
            self.apodcombobox.addItem(ap().name)
        self.apodcombobox.blockSignals(False)

        self.apod_graph = PlotItem(x=[], y=[])
        self.time_graph.addItem(self.apod_graph)

        for g in [self.freq_graph, self.time_graph]:
            pl = g.getPlotItem()
            pl.hideButtons()
            pl.setMenuEnabled(False)

        self._all_time = None
        self._all_freq = None

        self.change_apodization(0)

        self.shift_box.clicked.connect(self._update_shift)
        self.ls_spinbox.valueChanged.connect(self._update_shift)
        self.ls_lineedit.setValidator(QtGui.QDoubleValidator())
        self.ls_lineedit.textChanged.connect(self._update_shift)

        self.zerofill_box.clicked.connect(self._update_zf)
        self.zf_spinbox.valueChanged.connect(self._update_zf)

        self.apod_box.clicked.connect(self._update_apod)

        self.phase_box.clicked.connect(self._update_phase)
        self.ph0_spinbox.valueChanged.connect(self._update_phase)
        self.ph1_spinbox.valueChanged.connect(self._update_phase)
        self.pivot_lineedit.setValidator(QtGui.QDoubleValidator())
        self.pivot_lineedit.textChanged.connect(self._update_phase)
        self.pivot_lineedit.textEdited.connect(lambda x: self.pvt_line.setValue(float(x)))

    def add_data(self: QPreviewDialog, data: FID | Spectrum) -> bool:

        if isinstance(data, FID):
            if self._all_freq:
                msg = QtWidgets.QMessageBox.warning(self, 'Mixed types',
                                                    'Timesignals and spectra cannot be edited at the same time.')
                return False
            else:
                self._all_time = True
                self._all_freq = False

        elif isinstance(data, Spectrum):
            if self._all_time:
                msg = QtWidgets.QMessageBox.warning(self, 'Mixed types',
                                                    'Timesignals and spectra cannot be edited at the same time.')
                return False
            else:
                self._all_time = False
                self._all_freq = True

        fid = data.copy()
        spec = self._temp_fft_time(fid.x, fid.y, self.baseline_box.isChecked())

        x_len = data.x.size
        self.zf_spinbox.setMaximum(min(2**17//x_len, 3))

        real_plt = PlotItem(x=fid.x, y=fid.y.real, pen=mkPen('b'))
        imag_plt = PlotItem(x=fid.x, y=fid.y.imag, pen=mkPen('r'))
        self.time_graph.addItem(imag_plt)
        self.time_graph.addItem(real_plt)

        real_plt_fft = PlotItem(x=spec[0], y=spec[1].real, pen=mkPen('b'))
        imag_plt_fft = PlotItem(x=spec[0], y=spec[1].imag, pen=mkPen('r'))
        self.freq_graph.addItem(imag_plt_fft)
        self.freq_graph.addItem(real_plt_fft)

        self.data.append(data)
        for p in [self._tmp_data_bl, self._tmp_data_ls]:
            p.append(data.y.copy())

        for p in [self._tmp_data_zf, self._tmp_data_ap]:
            p.append((data.x, data.y.copy()))

        self._tmp_data_ph.append((data.x, data.y, spec[0], spec[1]))

        self.graphs.append((real_plt, imag_plt, real_plt_fft, imag_plt_fft))

        return True

    @QtCore.pyqtSlot(name='on_baseline_box_clicked')
    def _update_bl(self):
        if self.baseline_box.isChecked():
            for y in self._tmp_data_bl:
                self._temp_baseline(y)
        else:
            for i, d in enumerate(self.data):
                self._tmp_data_bl[i] = d.y.copy()

        self._update_shift()

    def _update_shift(self):
        if self.shift_box.isChecked():
            if self.ls_combobox.currentIndex() == 0:
                num_points = self.ls_spinbox.value()
                is_time = False
            else:
                num_points = float(self.ls_lineedit.text())
                is_time = True

            for i, y in enumerate(self._tmp_data_bl):
                self._tmp_data_ls[i] = self._temp_leftshift(self.data[i].dx, y, num_points, is_time)

        else:
            for i, y in enumerate(self._tmp_data_bl):
                self._tmp_data_ls[i] = y

        self._update_zf()

    def _update_zf(self):
        zf_padding = self.zf_spinbox.value()

        if self.zerofill_box.isChecked():
            for i, y in enumerate(self._tmp_data_ls):
                self._tmp_data_zf[i] = self._temp_zerofill(self.data[i].x, y, zf_padding)

        else:
            for i, y in enumerate(self._tmp_data_ls):
                self._tmp_data_zf[i] = self.data[i].x, y

        self._update_apod()

    def _update_apod(self):
        if self.apod_box.isChecked():
            model = self.apods[self.apodcombobox.currentIndex()]
            p = self._get_parameter()

            x_limit = np.inf, -np.inf
            y_limit = -np.inf

            for i, (x, y) in enumerate(self._tmp_data_zf):
                self._tmp_data_ap[i] = x, y * model.apod(x, *p)
                y_limit = max(y.real.max(), y_limit)
                x_limit = min(x_limit[0], x.min()), max(x_limit[1], x.max())

            _x_apod = np.linspace(*x_limit, num=150)
            _y_apod = model.apod(_x_apod, *p)
            self.apod_graph.setData(x=_x_apod, y=y_limit * _y_apod)
            self.apod_graph.show()

        else:
            for i, (x, y) in enumerate(self._tmp_data_zf):
                self._tmp_data_ap[i] = x, y

            self.apod_graph.hide()

        self._update_phase()

    def _update_phase(self):
        if self.phase_box.isChecked():
            pvt = float(self.pivot_lineedit.text())
            self.pvt_line.show()
            ph0 = self.ph0_spinbox.value()
            ph1 = self.ph1_spinbox.value()

            for i, (x, y) in enumerate(self._tmp_data_ap):
                x_fft, y_fft = self._temp_fft_time(x, y, self.baseline_box.isChecked())

                if ph0 != 0:
                    y = self._temp_phase(x, y, ph0, 0, 0)
                    y_fft = self._temp_phase(x, y_fft, ph0, ph1, pvt)
                elif ph1 != 0:
                    y_fft = self._temp_phase(x, y_fft, ph0, ph1, pvt)

                self._tmp_data_ph[i] = x, y, x_fft, y_fft

        else:
            self.pvt_line.hide()
            for i, (x, y) in enumerate(self._tmp_data_ap):
                self._tmp_data_ph[i] = x, y, *self._temp_fft_time(x, y, self.baseline_box.isChecked())

        self._update_plots()

    def _update_plots(self):
        for i, (x, y, xf, yf) in enumerate(self._tmp_data_ph):
            self.graphs[i][0].setData(x=x, y=y.real)
            self.graphs[i][1].setData(x=x, y=y.imag)

            self.graphs[i][2].setData(x=xf, y=yf.real)
            self.graphs[i][3].setData(x=xf, y=yf.imag)

    @staticmethod
    def _temp_baseline_time(y):
        y -= y[int(-0.12 * y.size):].mean()

    @staticmethod
    def _temp_baseline_freq(y):
        region = int(0.12 * y.size)
        y -= np.mean([y[-region:], y[:region]])

    @staticmethod
    def _temp_phase(x: np.ndarray, y: np.ndarray, ph0: float, ph1: float, pvt: float) -> np.ndarray:
        phase_correction = np.exp(-1j * (ph0 + ph1 * (x - pvt) / x.max()) * pi / 180.)
        _y = y * phase_correction

        return _y

    @staticmethod
    def _temp_zerofill(x: np.ndarray, y: np.ndarray, num_padding: int) -> tuple[np.ndarray, np.ndarray]:
        length = x.size
        factor = 2**num_padding

        _y = np.r_[y, np.zeros((factor-1) * length)]

        _temp_x = np.arange(1,  (factor-1) * length+1) * (x[1]-x[0]) + np.max(x)
        _x = np.r_[x, _temp_x]

        return _x, _y

    @staticmethod
    def _temp_leftshift(dx: np.ndarray, y: np.ndarray, points: float | int, is_time: bool) -> np.ndarray:
        if is_time:
            points = int(points//dx)
        _y = np.roll(y, -points)
        _y[-points-1:] = 0

        return _y

    @staticmethod
    def _temp_fft_time(x: np.ndarray, y: np.ndarray, baseline: bool = False) -> tuple[np.ndarray, np.ndarray]:
        y_fft = fftshift(fft(y))
        x_fft = fftshift(fftfreq(len(x), d=x[1]-x[0]))

        if baseline:
            QPreviewDialog._temp_baseline_freq(y_fft)

        return x_fft, y_fft

    @staticmethod
    def _temp_fft_freq(x: np.ndarray, y: np.ndarray, _=None):
        return x, y

    def move_line(self, evt):
        self.pivot_lineedit.setText(f'{evt.value():.5g}')

    @QtCore.pyqtSlot(int, name='on_apodcombobox_currentIndexChanged')
    def change_apodization(self, index: int) -> None:
        # delete old widgets
        self.eqn_label.setText(convert(self.apods[index].equation))
        while self.widget_layout.count():
            item = self.widget_layout.takeAt(0)
            if isinstance(item, FormWidget):
                item.disconnect()

            try:
                item.widget().deleteLater()
            except AttributeError:
                pass

        # set up parameter widgets for new model
        for k, v in enumerate(self.apods[index].params):
            widget = FormWidget(name=v)
            widget.value = 1
            widget.valueChanged.connect(self._update_apod)
            self.widget_layout.addWidget(widget)

        self.widget_layout.addStretch()
        self._update_apod()

    def _get_parameter(self):
        p = []
        for i in range(self.widget_layout.count()):
            item = self.widget_layout.itemAt(i)
            w = item.widget()
            try:
                p.append(w.value)
            except AttributeError:
                continue

        return p

    @QtCore.pyqtSlot(int, name='on_ls_combobox_currentIndexChanged')
    def change_ls(self, idx: int) -> None:
        self.ls_lineedit.setVisible(bool(idx))
        self.ls_spinbox.setVisible(not bool(idx))

    @QtCore.pyqtSlot(bool, name='on_ft_checkbox_stateChanged')
    def change_ft(self, state: bool):
        self.ph1_spinbox.setEnabled(state)
        self.pivot_lineedit.setEnabled(state)

    def cleanup(self):
        self.blockSignals(True)

        for line in self.graphs:
            for g in line:
                self.time_graph.removeItem(g)
                self.freq_graph.removeItem(g)
                del g

        self.time_graph.clear()
        self.freq_graph.clear()

        self._tmp_data_ap = []
        self._tmp_data_bl = []
        self._tmp_data_ls = []
        self._tmp_data_ph = []
        self._tmp_data_zf = []

        self.data = []
        self.graphs = []
        self.freq_graph.removeItem(self.pvt_line)
        self.time_graph.removeItem(self.pvt_line)

        self.blockSignals(False)

    def get_value(self):
        edits = [(None,), (None,), (None,), (None,), (None,), (None,)]

        if self.baseline_box.isChecked():
            edits[0] = (True,)

        if self.zerofill_box.isChecked():
            edits[2] = (self.zf_spinbox.value(),)

        if self.shift_box.isChecked():
            if self.ls_combobox.currentIndex() == 0:
                edits[1] = (self.ls_spinbox.value(), 'pts')
            else:
                edits[1] = (float(self.ls_lineedit.text()), 'time')

        if self.apod_box.isChecked():
            edits[3] = (self._get_parameter(), self.apods[self.apodcombobox.currentIndex()])

        if self.phase_box.isChecked():
            edits[4] = (self.ph0_spinbox.value(),  self.ph1_spinbox.value(), float(self.pivot_lineedit.text()))

        if self.ft_box.isChecked():
            edits[5] = (self.phase_before_button.isChecked(),)

        return edits

    def exec(self):
        self._prepare_ui()
        return super().exec()

    def _prepare_ui(self):
        """Stuff we have to do before showing the window but after all the data was added"""

        vb = self.freq_graph.getPlotItem().getViewBox()
        vb.disableAutoRange(axis=vb.YAxis)

        vb = self.time_graph.getPlotItem().getViewBox()
        vb.disableAutoRange(axis=vb.YAxis)

        self.zerofill_box.setVisible(self._all_time)
        self.apod_box.setVisible(self._all_time)
        self.shift_box.setVisible(self._all_time)
        self.time_graph.setVisible(self._all_time)
        self.logtime_widget.setVisible(self._all_time)

    @QtCore.pyqtSlot(int, name='on_logx_time_stateChanged')
    @QtCore.pyqtSlot(int, name='on_logy_time_stateChanged')
    @QtCore.pyqtSlot(int, name='on_logx_freq_stateChanged')
    @QtCore.pyqtSlot(int, name='on_logy_freq_stateChanged')
    def set_log(self, state: int):
        switch = {
            self.logx_time: lambda _x: self.time_graph.setLogMode(x=_x),
            self.logy_time: lambda _x: self.time_graph.setLogMode(y=_x),
            self.logx_freq: lambda _x: self.freq_graph.setLogMode(x=_x),
            self.logy_freq: lambda _x: self.freq_graph.setLogMode(y=_x),
        }[self.sender()]
        switch(state == QtCore.Qt.Checked)

        vb = self.freq_graph.getPlotItem().getViewBox()
        vb.disableAutoRange(axis=vb.YAxis)

        vb = self.time_graph.getPlotItem().getViewBox()
        vb.disableAutoRange(axis=vb.YAxis)


        self._temp_baseline = self._temp_baseline_time if self._all_time else self._temp_baseline_freq
        self._temp_fft = self._temp_fft_time if self._all_time else self._temp_fft_freq

        self.freq_graph.setVisible(self._all_time)
        if self._all_freq:
            self.time_graph.addItem(self.pvt_line)
        else:
            self.freq_graph.addItem(self.pvt_line)