forked from IPKM/nmreval
changed FFHS integration; wrapping phase values; small stuff;
This commit is contained in:
parent
5120c9d57c
commit
89ce4bab9f
@ -8,7 +8,7 @@ from .signals import Signal
|
|||||||
|
|
||||||
class FID(Signal):
|
class FID(Signal):
|
||||||
"""
|
"""
|
||||||
Extensions if :class:`Signal` for NMR timesignals
|
Extensions of :class:`Signal` for NMR timesignals
|
||||||
"""
|
"""
|
||||||
def __init__(self, x, y, **kwargs):
|
def __init__(self, x, y, **kwargs):
|
||||||
super().__init__(x, y, **kwargs)
|
super().__init__(x, y, **kwargs)
|
||||||
|
@ -117,8 +117,6 @@ class Points:
|
|||||||
Args:
|
Args:
|
||||||
value: array of the same length as full or masked y
|
value: array of the same length as full or masked y
|
||||||
|
|
||||||
Returns:
|
|
||||||
|
|
||||||
"""
|
"""
|
||||||
value = np.asarray(value, dtype=self._y.dtype)
|
value = np.asarray(value, dtype=self._y.dtype)
|
||||||
if value.shape == self._y.shape:
|
if value.shape == self._y.shape:
|
||||||
@ -169,8 +167,6 @@ class Points:
|
|||||||
Args:
|
Args:
|
||||||
opts:
|
opts:
|
||||||
|
|
||||||
Returns:
|
|
||||||
|
|
||||||
"""
|
"""
|
||||||
self.meta.update(opts)
|
self.meta.update(opts)
|
||||||
|
|
||||||
@ -278,7 +274,7 @@ class Points:
|
|||||||
avg_range: Tuple[int, int] = (0, 0), avg_mode: str = 'mean',
|
avg_range: Tuple[int, int] = (0, 0), avg_mode: str = 'mean',
|
||||||
pts: Optional[list] = None) -> List[tuple]:
|
pts: Optional[list] = None) -> List[tuple]:
|
||||||
"""
|
"""
|
||||||
Return (x, y) values at specific positions.
|
Return (x, y) values at specified positions.
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
idx (list, optional) : List of indexes to evaluate.
|
idx (list, optional) : List of indexes to evaluate.
|
||||||
|
@ -26,7 +26,8 @@ class FFHS(Distribution):
|
|||||||
@staticmethod
|
@staticmethod
|
||||||
def specdens(omega, tau0, *args):
|
def specdens(omega, tau0, *args):
|
||||||
def integrand(u, o, tau0):
|
def integrand(u, o, tau0):
|
||||||
return FFHS.distribution(u, tau0) * u / (1+o**2 * u**2)
|
return u**4 * tau0 / (81 + 9*u**2 - 2*u**4 + u**6) / (u**4 + (o*tau0)**2)
|
||||||
|
# return FFHS.distribution(u, tau0) * u / (1+o**2 * u**2)
|
||||||
|
|
||||||
ret_val = np.array([quad(integrand, 0, np.infty, args=(o, tau0), epsabs=1e-12, epsrel=1e-12)[0] for o in omega])
|
ret_val = np.array([quad(integrand, 0, np.infty, args=(o, tau0), epsabs=1e-12, epsrel=1e-12)[0] for o in omega])
|
||||||
|
|
||||||
|
@ -35,7 +35,7 @@ class LogGaussian(Distribution):
|
|||||||
integration_ranges = [(omega_i, tau_j, sigma) for (omega_i, tau_j) in product(_t, _tau)]
|
integration_ranges = [(omega_i, tau_j, sigma) for (omega_i, tau_j) in product(_t, _tau)]
|
||||||
|
|
||||||
with np.errstate(divide='ignore'):
|
with np.errstate(divide='ignore'):
|
||||||
res = np.array(pool.map(_integrate_process_3, integration_ranges))
|
res = np.array(pool.map(_integrate_process_time, integration_ranges))
|
||||||
ret_val = res.reshape((_t.shape[0], _tau.shape[0]))
|
ret_val = res.reshape((_t.shape[0], _tau.shape[0]))
|
||||||
|
|
||||||
return ret_val.squeeze()
|
return ret_val.squeeze()
|
||||||
@ -49,8 +49,8 @@ class LogGaussian(Distribution):
|
|||||||
integration_ranges = [(omega_i, tau_j, sigma) for (omega_i, tau_j) in product(_omega, _tau)]
|
integration_ranges = [(omega_i, tau_j, sigma) for (omega_i, tau_j) in product(_omega, _tau)]
|
||||||
|
|
||||||
with np.errstate(divide='ignore'):
|
with np.errstate(divide='ignore'):
|
||||||
res_real = np.array(pool.map(_integrate_process_1, integration_ranges))
|
res_real = np.array(pool.map(_integrate_process_imag, integration_ranges))
|
||||||
res_imag = np.array(pool.map(_integrate_process_2, integration_ranges))
|
res_imag = np.array(pool.map(_integrate_process_real, integration_ranges))
|
||||||
ret_val = (res_real+1j*res_imag).reshape((_omega.shape[0], _tau.shape[0]))
|
ret_val = (res_real+1j*res_imag).reshape((_omega.shape[0], _tau.shape[0]))
|
||||||
|
|
||||||
return ret_val.squeeze()
|
return ret_val.squeeze()
|
||||||
@ -64,7 +64,7 @@ class LogGaussian(Distribution):
|
|||||||
integration_ranges = [(omega_i, tau_j, sigma) for (omega_i, tau_j) in product(_omega, _tau)]
|
integration_ranges = [(omega_i, tau_j, sigma) for (omega_i, tau_j) in product(_omega, _tau)]
|
||||||
|
|
||||||
with np.errstate(divide='ignore'):
|
with np.errstate(divide='ignore'):
|
||||||
res = np.array(pool.map(_integrate_process_1, integration_ranges))
|
res = np.array(pool.map(_integrate_process_imag, integration_ranges))
|
||||||
ret_val = res.reshape((_omega.shape[0], _tau.shape[0]))
|
ret_val = res.reshape((_omega.shape[0], _tau.shape[0]))
|
||||||
|
|
||||||
ret_val /= _omega[:, None]
|
ret_val /= _omega[:, None]
|
||||||
@ -75,15 +75,15 @@ class LogGaussian(Distribution):
|
|||||||
return args[0]*np.exp(args[1]**2 / 2)
|
return args[0]*np.exp(args[1]**2 / 2)
|
||||||
|
|
||||||
|
|
||||||
def _integrate_process_1(args):
|
def _integrate_process_imag(args):
|
||||||
omega_i, tau_j, sigma = args
|
omega_i, tau_j, sigma = args
|
||||||
area, _ = quad(_integrand_freq_imag_high, 0, 50, args=(omega_i, tau_j, sigma))
|
area = quad(_integrand_freq_imag_high, 0, 50, args=(omega_i, tau_j, sigma))[0]
|
||||||
area += quad(_integrand_freq_imag_low, -50, 0, args=(omega_i, tau_j, sigma))[0]
|
area += quad(_integrand_freq_imag_low, -50, 0, args=(omega_i, tau_j, sigma))[0]
|
||||||
|
|
||||||
return area
|
return area
|
||||||
|
|
||||||
|
|
||||||
def _integrate_process_2(args):
|
def _integrate_process_real(args):
|
||||||
omega_i, tau_j, sigma = args
|
omega_i, tau_j, sigma = args
|
||||||
area = quad(_integrand_freq_real_high, 0, 50, args=(omega_i, tau_j, sigma))[0]
|
area = quad(_integrand_freq_real_high, 0, 50, args=(omega_i, tau_j, sigma))[0]
|
||||||
area += quad(_integrand_freq_real_low, -50, 0, args=(omega_i, tau_j, sigma))[0]
|
area += quad(_integrand_freq_real_low, -50, 0, args=(omega_i, tau_j, sigma))[0]
|
||||||
@ -91,7 +91,7 @@ def _integrate_process_2(args):
|
|||||||
return area
|
return area
|
||||||
|
|
||||||
|
|
||||||
def _integrate_process_3(args):
|
def _integrate_process_time(args):
|
||||||
omega_i, tau_j, sigma = args
|
omega_i, tau_j, sigma = args
|
||||||
return quad(_integrand_time, -50, 50, args=(omega_i, tau_j, sigma))[0]
|
return quad(_integrand_time, -50, 50, args=(omega_i, tau_j, sigma))[0]
|
||||||
|
|
||||||
|
@ -26,7 +26,7 @@ def evaluate(sample, empty, reference, ref_points=Cyclohexane, show_cooling=Fals
|
|||||||
if show_cooling:
|
if show_cooling:
|
||||||
fig, ax = plt.subplots()
|
fig, ax = plt.subplots()
|
||||||
print('\n')
|
print('\n')
|
||||||
for k, v in sample.heating.items():
|
for k, v in sample.cooling.items():
|
||||||
print('Plot run {} with cooling rate {} K/min'.format(k, v))
|
print('Plot run {} with cooling rate {} K/min'.format(k, v))
|
||||||
c = sample.flow_data(v, mode='c')
|
c = sample.flow_data(v, mode='c')
|
||||||
ax.plot(c[0], c[1], label=str(v)+' K/min')
|
ax.plot(c[0], c[1], label=str(v)+' K/min')
|
||||||
|
@ -2,9 +2,10 @@
|
|||||||
|
|
||||||
# Form implementation generated from reading ui file 'resources/_ui/editsignalwidget.ui'
|
# Form implementation generated from reading ui file 'resources/_ui/editsignalwidget.ui'
|
||||||
#
|
#
|
||||||
# Created by: PyQt5 UI code generator 5.12.3
|
# Created by: PyQt5 UI code generator 5.15.4
|
||||||
#
|
#
|
||||||
# WARNING! All changes made in this file will be lost!
|
# WARNING: Any manual changes made to this file will be lost when pyuic5 is
|
||||||
|
# run again. Do not edit this file unless you know what you are doing.
|
||||||
|
|
||||||
|
|
||||||
from PyQt5 import QtCore, QtGui, QtWidgets
|
from PyQt5 import QtCore, QtGui, QtWidgets
|
||||||
@ -73,6 +74,7 @@ class Ui_Form(object):
|
|||||||
self.ph1slider = QtWidgets.QDoubleSpinBox(self.groupBox_2)
|
self.ph1slider = QtWidgets.QDoubleSpinBox(self.groupBox_2)
|
||||||
self.ph1slider.setMinimum(-360.0)
|
self.ph1slider.setMinimum(-360.0)
|
||||||
self.ph1slider.setMaximum(360.0)
|
self.ph1slider.setMaximum(360.0)
|
||||||
|
self.ph1slider.setWrapping(True)
|
||||||
self.ph1slider.setObjectName("ph1slider")
|
self.ph1slider.setObjectName("ph1slider")
|
||||||
self.gridLayout_4.addWidget(self.ph1slider, 5, 1, 1, 1)
|
self.gridLayout_4.addWidget(self.ph1slider, 5, 1, 1, 1)
|
||||||
self.label_6 = QtWidgets.QLabel(self.groupBox_2)
|
self.label_6 = QtWidgets.QLabel(self.groupBox_2)
|
||||||
@ -101,6 +103,7 @@ class Ui_Form(object):
|
|||||||
self.ph0slider.setSizePolicy(sizePolicy)
|
self.ph0slider.setSizePolicy(sizePolicy)
|
||||||
self.ph0slider.setMinimum(-180.0)
|
self.ph0slider.setMinimum(-180.0)
|
||||||
self.ph0slider.setMaximum(180.0)
|
self.ph0slider.setMaximum(180.0)
|
||||||
|
self.ph0slider.setWrapping(True)
|
||||||
self.ph0slider.setObjectName("ph0slider")
|
self.ph0slider.setObjectName("ph0slider")
|
||||||
self.gridLayout_4.addWidget(self.ph0slider, 2, 1, 1, 1)
|
self.gridLayout_4.addWidget(self.ph0slider, 2, 1, 1, 1)
|
||||||
self.label_8 = QtWidgets.QLabel(self.groupBox_2)
|
self.label_8 = QtWidgets.QLabel(self.groupBox_2)
|
||||||
|
@ -2,9 +2,10 @@
|
|||||||
|
|
||||||
# Form implementation generated from reading ui file 'resources/_ui/hdftree.ui'
|
# Form implementation generated from reading ui file 'resources/_ui/hdftree.ui'
|
||||||
#
|
#
|
||||||
# Created by: PyQt5 UI code generator 5.12.3
|
# Created by: PyQt5 UI code generator 5.15.4
|
||||||
#
|
#
|
||||||
# WARNING! All changes made in this file will be lost!
|
# WARNING: Any manual changes made to this file will be lost when pyuic5 is
|
||||||
|
# run again. Do not edit this file unless you know what you are doing.
|
||||||
|
|
||||||
|
|
||||||
from PyQt5 import QtCore, QtGui, QtWidgets
|
from PyQt5 import QtCore, QtGui, QtWidgets
|
||||||
@ -14,25 +15,37 @@ class Ui_Hdf_Dialog(object):
|
|||||||
def setupUi(self, Hdf_Dialog):
|
def setupUi(self, Hdf_Dialog):
|
||||||
Hdf_Dialog.setObjectName("Hdf_Dialog")
|
Hdf_Dialog.setObjectName("Hdf_Dialog")
|
||||||
Hdf_Dialog.resize(460, 772)
|
Hdf_Dialog.resize(460, 772)
|
||||||
self.verticalLayout = QtWidgets.QVBoxLayout(Hdf_Dialog)
|
self.verticalLayout_2 = QtWidgets.QVBoxLayout(Hdf_Dialog)
|
||||||
self.verticalLayout.setContentsMargins(4, 4, 4, 4)
|
self.verticalLayout_2.setObjectName("verticalLayout_2")
|
||||||
self.verticalLayout.setSpacing(3)
|
self.label_3 = QtWidgets.QLabel(Hdf_Dialog)
|
||||||
|
self.label_3.setTextFormat(QtCore.Qt.RichText)
|
||||||
|
self.label_3.setObjectName("label_3")
|
||||||
|
self.verticalLayout_2.addWidget(self.label_3)
|
||||||
|
self.splitter = QtWidgets.QSplitter(Hdf_Dialog)
|
||||||
|
self.splitter.setOrientation(QtCore.Qt.Vertical)
|
||||||
|
self.splitter.setChildrenCollapsible(False)
|
||||||
|
self.splitter.setObjectName("splitter")
|
||||||
|
self.horizontalLayoutWidget = QtWidgets.QWidget(self.splitter)
|
||||||
|
self.horizontalLayoutWidget.setObjectName("horizontalLayoutWidget")
|
||||||
|
self.verticalLayout = QtWidgets.QVBoxLayout(self.horizontalLayoutWidget)
|
||||||
|
self.verticalLayout.setContentsMargins(0, 0, 0, 0)
|
||||||
|
self.verticalLayout.setSpacing(0)
|
||||||
self.verticalLayout.setObjectName("verticalLayout")
|
self.verticalLayout.setObjectName("verticalLayout")
|
||||||
self.verticalLayout_3 = QtWidgets.QVBoxLayout()
|
self.verticalLayout_3 = QtWidgets.QVBoxLayout()
|
||||||
self.verticalLayout_3.setObjectName("verticalLayout_3")
|
self.verticalLayout_3.setObjectName("verticalLayout_3")
|
||||||
self.verticalLayout.addLayout(self.verticalLayout_3)
|
self.verticalLayout.addLayout(self.verticalLayout_3)
|
||||||
self.widget = QtWidgets.QWidget(Hdf_Dialog)
|
self.widget = QtWidgets.QWidget(self.horizontalLayoutWidget)
|
||||||
self.widget.setObjectName("widget")
|
self.widget.setObjectName("widget")
|
||||||
self.gridLayout = QtWidgets.QGridLayout(self.widget)
|
self.gridLayout = QtWidgets.QGridLayout(self.widget)
|
||||||
self.gridLayout.setContentsMargins(0, 0, 0, 0)
|
self.gridLayout.setContentsMargins(0, 0, 0, 0)
|
||||||
self.gridLayout.setSpacing(2)
|
self.gridLayout.setSpacing(2)
|
||||||
self.gridLayout.setObjectName("gridLayout")
|
self.gridLayout.setObjectName("gridLayout")
|
||||||
self.comboBox_2 = QtWidgets.QComboBox(self.widget)
|
|
||||||
self.comboBox_2.setObjectName("comboBox_2")
|
|
||||||
self.gridLayout.addWidget(self.comboBox_2, 1, 1, 1, 1)
|
|
||||||
self.label = QtWidgets.QLabel(self.widget)
|
self.label = QtWidgets.QLabel(self.widget)
|
||||||
self.label.setObjectName("label")
|
self.label.setObjectName("label")
|
||||||
self.gridLayout.addWidget(self.label, 0, 0, 1, 1)
|
self.gridLayout.addWidget(self.label, 0, 0, 1, 1)
|
||||||
|
self.comboBox_2 = QtWidgets.QComboBox(self.widget)
|
||||||
|
self.comboBox_2.setObjectName("comboBox_2")
|
||||||
|
self.gridLayout.addWidget(self.comboBox_2, 1, 1, 1, 1)
|
||||||
self.label_2 = QtWidgets.QLabel(self.widget)
|
self.label_2 = QtWidgets.QLabel(self.widget)
|
||||||
self.label_2.setObjectName("label_2")
|
self.label_2.setObjectName("label_2")
|
||||||
self.gridLayout.addWidget(self.label_2, 1, 0, 1, 1)
|
self.gridLayout.addWidget(self.label_2, 1, 0, 1, 1)
|
||||||
@ -40,13 +53,18 @@ class Ui_Hdf_Dialog(object):
|
|||||||
self.comboBox.setObjectName("comboBox")
|
self.comboBox.setObjectName("comboBox")
|
||||||
self.gridLayout.addWidget(self.comboBox, 0, 1, 1, 1)
|
self.gridLayout.addWidget(self.comboBox, 0, 1, 1, 1)
|
||||||
self.verticalLayout.addWidget(self.widget)
|
self.verticalLayout.addWidget(self.widget)
|
||||||
self.widget_2 = ExpandableWidget(Hdf_Dialog)
|
self.widget_2 = ExpandableWidget(self.splitter)
|
||||||
|
sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.MinimumExpanding)
|
||||||
|
sizePolicy.setHorizontalStretch(0)
|
||||||
|
sizePolicy.setVerticalStretch(0)
|
||||||
|
sizePolicy.setHeightForWidth(self.widget_2.sizePolicy().hasHeightForWidth())
|
||||||
|
self.widget_2.setSizePolicy(sizePolicy)
|
||||||
self.widget_2.setObjectName("widget_2")
|
self.widget_2.setObjectName("widget_2")
|
||||||
self.verticalLayout.addWidget(self.widget_2)
|
self.verticalLayout_2.addWidget(self.splitter)
|
||||||
self.buttonBox = QtWidgets.QDialogButtonBox(Hdf_Dialog)
|
self.buttonBox = QtWidgets.QDialogButtonBox(Hdf_Dialog)
|
||||||
self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok)
|
self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok)
|
||||||
self.buttonBox.setObjectName("buttonBox")
|
self.buttonBox.setObjectName("buttonBox")
|
||||||
self.verticalLayout.addWidget(self.buttonBox)
|
self.verticalLayout_2.addWidget(self.buttonBox)
|
||||||
|
|
||||||
self.retranslateUi(Hdf_Dialog)
|
self.retranslateUi(Hdf_Dialog)
|
||||||
self.buttonBox.rejected.connect(Hdf_Dialog.close)
|
self.buttonBox.rejected.connect(Hdf_Dialog.close)
|
||||||
@ -56,6 +74,7 @@ class Ui_Hdf_Dialog(object):
|
|||||||
def retranslateUi(self, Hdf_Dialog):
|
def retranslateUi(self, Hdf_Dialog):
|
||||||
_translate = QtCore.QCoreApplication.translate
|
_translate = QtCore.QCoreApplication.translate
|
||||||
Hdf_Dialog.setWindowTitle(_translate("Hdf_Dialog", "View HDF file"))
|
Hdf_Dialog.setWindowTitle(_translate("Hdf_Dialog", "View HDF file"))
|
||||||
|
self.label_3.setText(_translate("Hdf_Dialog", "<html><head/><body><p><span style=\" color:#000000;\">Colors: </span><span style=\" color:#1f77b4;\">Time signals and spectra</span><span style=\" color:#000000;\">, </span><span style=\" color:#ff7f0e;\">accumulations</span></p></body></html>"))
|
||||||
self.label.setText(_translate("Hdf_Dialog", "Label"))
|
self.label.setText(_translate("Hdf_Dialog", "Label"))
|
||||||
self.label_2.setText(_translate("Hdf_Dialog", "Group"))
|
self.label_2.setText(_translate("Hdf_Dialog", "Group"))
|
||||||
from ..lib.expandablewidget import ExpandableWidget
|
from ..lib.expandablewidget import ExpandableWidget
|
||||||
|
@ -2,9 +2,10 @@
|
|||||||
|
|
||||||
# Form implementation generated from reading ui file 'resources/_ui/phase_corr_dialog.ui'
|
# Form implementation generated from reading ui file 'resources/_ui/phase_corr_dialog.ui'
|
||||||
#
|
#
|
||||||
# Created by: PyQt5 UI code generator 5.12.3
|
# Created by: PyQt5 UI code generator 5.15.4
|
||||||
#
|
#
|
||||||
# WARNING! All changes made in this file will be lost!
|
# WARNING: Any manual changes made to this file will be lost when pyuic5 is
|
||||||
|
# run again. Do not edit this file unless you know what you are doing.
|
||||||
|
|
||||||
|
|
||||||
from PyQt5 import QtCore, QtGui, QtWidgets
|
from PyQt5 import QtCore, QtGui, QtWidgets
|
||||||
@ -46,6 +47,7 @@ class Ui_SignalEdit(object):
|
|||||||
sizePolicy.setVerticalStretch(0)
|
sizePolicy.setVerticalStretch(0)
|
||||||
sizePolicy.setHeightForWidth(self.ph0slider.sizePolicy().hasHeightForWidth())
|
sizePolicy.setHeightForWidth(self.ph0slider.sizePolicy().hasHeightForWidth())
|
||||||
self.ph0slider.setSizePolicy(sizePolicy)
|
self.ph0slider.setSizePolicy(sizePolicy)
|
||||||
|
self.ph0slider.setWrapping(True)
|
||||||
self.ph0slider.setMinimum(-180.0)
|
self.ph0slider.setMinimum(-180.0)
|
||||||
self.ph0slider.setMaximum(180.0)
|
self.ph0slider.setMaximum(180.0)
|
||||||
self.ph0slider.setObjectName("ph0slider")
|
self.ph0slider.setObjectName("ph0slider")
|
||||||
@ -61,6 +63,7 @@ class Ui_SignalEdit(object):
|
|||||||
sizePolicy.setVerticalStretch(0)
|
sizePolicy.setVerticalStretch(0)
|
||||||
sizePolicy.setHeightForWidth(self.ph1slider.sizePolicy().hasHeightForWidth())
|
sizePolicy.setHeightForWidth(self.ph1slider.sizePolicy().hasHeightForWidth())
|
||||||
self.ph1slider.setSizePolicy(sizePolicy)
|
self.ph1slider.setSizePolicy(sizePolicy)
|
||||||
|
self.ph1slider.setWrapping(True)
|
||||||
self.ph1slider.setMinimum(-360.0)
|
self.ph1slider.setMinimum(-360.0)
|
||||||
self.ph1slider.setMaximum(360.0)
|
self.ph1slider.setMaximum(360.0)
|
||||||
self.ph1slider.setObjectName("ph1slider")
|
self.ph1slider.setObjectName("ph1slider")
|
||||||
|
@ -2,9 +2,10 @@
|
|||||||
|
|
||||||
# Form implementation generated from reading ui file 'resources/_ui/valueeditor.ui'
|
# Form implementation generated from reading ui file 'resources/_ui/valueeditor.ui'
|
||||||
#
|
#
|
||||||
# Created by: PyQt5 UI code generator 5.12.3
|
# Created by: PyQt5 UI code generator 5.15.4
|
||||||
#
|
#
|
||||||
# WARNING! All changes made in this file will be lost!
|
# WARNING: Any manual changes made to this file will be lost when pyuic5 is
|
||||||
|
# run again. Do not edit this file unless you know what you are doing.
|
||||||
|
|
||||||
|
|
||||||
from PyQt5 import QtCore, QtGui, QtWidgets
|
from PyQt5 import QtCore, QtGui, QtWidgets
|
||||||
@ -47,30 +48,47 @@ class Ui_MaskDialog(object):
|
|||||||
spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
|
spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
|
||||||
self.horizontalLayout.addItem(spacerItem)
|
self.horizontalLayout.addItem(spacerItem)
|
||||||
self.verticalLayout.addLayout(self.horizontalLayout)
|
self.verticalLayout.addLayout(self.horizontalLayout)
|
||||||
self.gridLayout = QtWidgets.QGridLayout()
|
self.line = QtWidgets.QFrame(MaskDialog)
|
||||||
self.gridLayout.setContentsMargins(-1, 0, -1, -1)
|
self.line.setFrameShadow(QtWidgets.QFrame.Raised)
|
||||||
self.gridLayout.setSpacing(3)
|
self.line.setLineWidth(3)
|
||||||
self.gridLayout.setObjectName("gridLayout")
|
self.line.setFrameShape(QtWidgets.QFrame.HLine)
|
||||||
|
self.line.setObjectName("line")
|
||||||
|
self.verticalLayout.addWidget(self.line)
|
||||||
|
self.horizontalLayout_2 = QtWidgets.QHBoxLayout()
|
||||||
|
self.horizontalLayout_2.setContentsMargins(-1, 0, -1, -1)
|
||||||
|
self.horizontalLayout_2.setSpacing(3)
|
||||||
|
self.horizontalLayout_2.setObjectName("horizontalLayout_2")
|
||||||
self.add_button = QtWidgets.QPushButton(MaskDialog)
|
self.add_button = QtWidgets.QPushButton(MaskDialog)
|
||||||
icon = QtGui.QIcon.fromTheme("list-add")
|
icon = QtGui.QIcon.fromTheme("list-add")
|
||||||
self.add_button.setIcon(icon)
|
self.add_button.setIcon(icon)
|
||||||
self.add_button.setObjectName("add_button")
|
self.add_button.setObjectName("add_button")
|
||||||
self.gridLayout.addWidget(self.add_button, 0, 0, 1, 2)
|
self.horizontalLayout_2.addWidget(self.add_button)
|
||||||
self.delete_button = QtWidgets.QPushButton(MaskDialog)
|
self.delete_button = QtWidgets.QPushButton(MaskDialog)
|
||||||
icon = QtGui.QIcon.fromTheme("list-remove")
|
icon = QtGui.QIcon.fromTheme("list-remove")
|
||||||
self.delete_button.setIcon(icon)
|
self.delete_button.setIcon(icon)
|
||||||
self.delete_button.setObjectName("delete_button")
|
self.delete_button.setObjectName("delete_button")
|
||||||
self.gridLayout.addWidget(self.delete_button, 0, 2, 1, 2)
|
self.horizontalLayout_2.addWidget(self.delete_button)
|
||||||
self.split_button = QtWidgets.QPushButton(MaskDialog)
|
self.split_button = QtWidgets.QPushButton(MaskDialog)
|
||||||
self.split_button.setObjectName("split_button")
|
self.split_button.setObjectName("split_button")
|
||||||
self.gridLayout.addWidget(self.split_button, 0, 4, 1, 2)
|
self.horizontalLayout_2.addWidget(self.split_button)
|
||||||
|
self.verticalLayout.addLayout(self.horizontalLayout_2)
|
||||||
|
self.line_2 = QtWidgets.QFrame(MaskDialog)
|
||||||
|
self.line_2.setLineWidth(3)
|
||||||
|
self.line_2.setFrameShape(QtWidgets.QFrame.HLine)
|
||||||
|
self.line_2.setFrameShadow(QtWidgets.QFrame.Sunken)
|
||||||
|
self.line_2.setObjectName("line_2")
|
||||||
|
self.verticalLayout.addWidget(self.line_2)
|
||||||
|
self.horizontalLayout_3 = QtWidgets.QHBoxLayout()
|
||||||
|
self.horizontalLayout_3.setContentsMargins(-1, 0, -1, -1)
|
||||||
|
self.horizontalLayout_3.setSpacing(3)
|
||||||
|
self.horizontalLayout_3.setObjectName("horizontalLayout_3")
|
||||||
self.mask_button = QtWidgets.QPushButton(MaskDialog)
|
self.mask_button = QtWidgets.QPushButton(MaskDialog)
|
||||||
self.mask_button.setObjectName("mask_button")
|
self.mask_button.setObjectName("mask_button")
|
||||||
self.gridLayout.addWidget(self.mask_button, 1, 0, 1, 3)
|
self.horizontalLayout_3.addWidget(self.mask_button)
|
||||||
self.unmaskbutton = QtWidgets.QPushButton(MaskDialog)
|
self.unmaskbutton = QtWidgets.QPushButton(MaskDialog)
|
||||||
self.unmaskbutton.setObjectName("unmaskbutton")
|
self.unmaskbutton.setObjectName("unmaskbutton")
|
||||||
self.gridLayout.addWidget(self.unmaskbutton, 1, 3, 1, 3)
|
self.horizontalLayout_3.addWidget(self.unmaskbutton)
|
||||||
self.verticalLayout.addLayout(self.gridLayout)
|
self.verticalLayout.addLayout(self.horizontalLayout_3)
|
||||||
self.label.setBuddy(self.spinBox)
|
self.label.setBuddy(self.spinBox)
|
||||||
|
|
||||||
self.retranslateUi(MaskDialog)
|
self.retranslateUi(MaskDialog)
|
||||||
|
@ -7,7 +7,7 @@ from ...lib.colors import Tab10
|
|||||||
from ..Qt import QtGui, QtCore, QtWidgets
|
from ..Qt import QtGui, QtCore, QtWidgets
|
||||||
from .._py.shift_scale_dialog import Ui_shift_dialog
|
from .._py.shift_scale_dialog import Ui_shift_dialog
|
||||||
from ..lib.pg_objects import PlotItem
|
from ..lib.pg_objects import PlotItem
|
||||||
from ..lib.utils import SciSpinBox
|
from ..lib.spinboxes import SciSpinBox
|
||||||
|
|
||||||
|
|
||||||
class QShift(QtWidgets.QDialog, Ui_shift_dialog):
|
class QShift(QtWidgets.QDialog, Ui_shift_dialog):
|
||||||
|
@ -1,8 +1,9 @@
|
|||||||
import numpy as np
|
import numpy as np
|
||||||
import pyqtgraph as pg
|
from pyqtgraph import mkPen
|
||||||
from numpy import inf, linspace
|
from numpy import inf, linspace
|
||||||
from numpy.fft import fft, fftfreq, fftshift
|
from numpy.fft import fft, fftfreq, fftshift
|
||||||
|
|
||||||
|
from ...lib.pg_objects import PlotItem, LogInfiniteLine
|
||||||
from ....lib.importer import find_models
|
from ....lib.importer import find_models
|
||||||
from ....math import apodization as apodization
|
from ....math import apodization as apodization
|
||||||
from ....utils.text import convert
|
from ....utils.text import convert
|
||||||
@ -24,10 +25,19 @@ class QPreviewDialogs(QtWidgets.QDialog):
|
|||||||
|
|
||||||
self.mode = ''
|
self.mode = ''
|
||||||
|
|
||||||
|
def setRange(self, xlim: list, ylim: list, logmode: list[bool]):
|
||||||
|
self.graphicsView.getPlotItem().setLogMode(x=logmode[0], y=logmode[1])
|
||||||
|
if logmode[0]:
|
||||||
|
xlim = [np.log10(x) for x in xlim]
|
||||||
|
if logmode[1]:
|
||||||
|
ylim = [np.log10(y) for y in ylim]
|
||||||
|
|
||||||
|
self.graphicsView.setRange(xRange=xlim, yRange=ylim, padding=0, disableAutoRange=True)
|
||||||
|
|
||||||
def add_data(self, x, y):
|
def add_data(self, x, y):
|
||||||
self.data.append((x, y))
|
self.data.append((x, y))
|
||||||
real_plt = pg.PlotDataItem(x=x, y=y.real, pen=pg.mkColor('b'))
|
real_plt = PlotItem(x=x, y=y.real, pen=mkPen('b'))
|
||||||
imag_plt = pg.PlotDataItem(x=x, y=y.imag, pen=pg.mkColor('r'))
|
imag_plt = PlotItem(x=x, y=y.imag, pen=mkPen('r'))
|
||||||
self.graphs.append((real_plt, imag_plt))
|
self.graphs.append((real_plt, imag_plt))
|
||||||
self.graphicsView.addItem(real_plt)
|
self.graphicsView.addItem(real_plt)
|
||||||
self.graphicsView.addItem(imag_plt)
|
self.graphicsView.addItem(imag_plt)
|
||||||
@ -70,7 +80,7 @@ class QPhasedialog(QPreviewDialogs, Ui_SignalEdit):
|
|||||||
|
|
||||||
self.mode = 'ph'
|
self.mode = 'ph'
|
||||||
|
|
||||||
self.pvt_line = pg.InfiniteLine(pos=0, movable=True)
|
self.pvt_line = LogInfiniteLine(pos=0, movable=True)
|
||||||
self.graphicsView.addItem(self.pvt_line)
|
self.graphicsView.addItem(self.pvt_line)
|
||||||
self.pvt_line.sigPositionChanged.connect(self.move_line)
|
self.pvt_line.sigPositionChanged.connect(self.move_line)
|
||||||
|
|
||||||
@ -109,7 +119,7 @@ class QApodDialog(QPreviewDialogs, Ui_ApodEdit):
|
|||||||
self.apodcombobox.addItem(ap().name)
|
self.apodcombobox.addItem(ap().name)
|
||||||
self.apodcombobox.blockSignals(False)
|
self.apodcombobox.blockSignals(False)
|
||||||
|
|
||||||
self.apod_graph = pg.PlotDataItem(x=[], y=[])
|
self.apod_graph = PlotItem(x=[], y=[])
|
||||||
self.graphicsView.addItem(self.apod_graph)
|
self.graphicsView.addItem(self.apod_graph)
|
||||||
|
|
||||||
self.mode = 'ap'
|
self.mode = 'ap'
|
||||||
@ -117,14 +127,14 @@ class QApodDialog(QPreviewDialogs, Ui_ApodEdit):
|
|||||||
self.change_apodization(0)
|
self.change_apodization(0)
|
||||||
|
|
||||||
def add_data(self, x, y):
|
def add_data(self, x, y):
|
||||||
real_plt = pg.PlotDataItem(x=x, y=y.real, pen=pg.mkPen('b'))
|
real_plt = PlotItem(x=x, y=y.real, pen=mkPen('b'))
|
||||||
# imag_plt = pg.PlotDataItem(x=x, y=y.imag, pen=pg.mkPen('r'))
|
# imag_plt = (x=x, y=y.imag, pen=pg.mkPen('r'))
|
||||||
self.graphicsView.addItem(real_plt)
|
self.graphicsView.addItem(real_plt)
|
||||||
# self.graphicsView.addItem(imag_plt)
|
# self.graphicsView.addItem(imag_plt)
|
||||||
|
|
||||||
y_fft = fftshift(fft(y))
|
y_fft = fftshift(fft(y))
|
||||||
x_fft = fftshift(fftfreq(len(x), d=x[1]-x[0]))
|
x_fft = fftshift(fftfreq(len(x), d=x[1]-x[0]))
|
||||||
real_plt_fft = pg.PlotDataItem(x=x_fft, y=y_fft.real, pen=pg.mkPen('b'))
|
real_plt_fft = PlotItem(x=x_fft, y=y_fft.real, pen=mkPen('b'))
|
||||||
# imag_plt_fft = pg.PlotDataItem(x=x_fft, y=y_fft.imag, pen=pg.mkPen('b'))
|
# imag_plt_fft = pg.PlotDataItem(x=x_fft, y=y_fft.imag, pen=pg.mkPen('b'))
|
||||||
self.graphicsView_2.addItem(real_plt_fft)
|
self.graphicsView_2.addItem(real_plt_fft)
|
||||||
# self.graphicsView_2.addItem(imag_plt_fft)
|
# self.graphicsView_2.addItem(imag_plt_fft)
|
||||||
|
@ -61,10 +61,10 @@ class QHdfViewer(QtWidgets.QDialog, Ui_Hdf_Dialog):
|
|||||||
label_item.setFlags(QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsSelectable)
|
label_item.setFlags(QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsSelectable)
|
||||||
label_item.setCheckState(0, QtCore.Qt.Unchecked)
|
label_item.setCheckState(0, QtCore.Qt.Unchecked)
|
||||||
if child.type == 'signal':
|
if child.type == 'signal':
|
||||||
label_item.setBackground(0, QtGui.QBrush(QtGui.QColor('cyan')))
|
label_item.setBackground(0, QtGui.QBrush(QtGui.QColor(31, 119, 180)))
|
||||||
label_item.setCheckState(1, QtCore.Qt.Unchecked)
|
label_item.setCheckState(1, QtCore.Qt.Unchecked)
|
||||||
elif child.type == 'points':
|
elif child.type == 'points':
|
||||||
label_item.setBackground(0, QtGui.QBrush(QtGui.QColor('red')))
|
label_item.setBackground(0, QtGui.QBrush(QtGui.QColor(255, 127, 14)))
|
||||||
item.addChild(label_item)
|
item.addChild(label_item)
|
||||||
self._populate_tree(child, label_item)
|
self._populate_tree(child, label_item)
|
||||||
|
|
||||||
|
@ -137,6 +137,7 @@ class Namespace:
|
|||||||
|
|
||||||
class QNamespaceWidget(QtWidgets.QWidget, Ui_Form):
|
class QNamespaceWidget(QtWidgets.QWidget, Ui_Form):
|
||||||
selected = QtCore.pyqtSignal(str)
|
selected = QtCore.pyqtSignal(str)
|
||||||
|
sendKey = QtCore.pyqtSignal(str)
|
||||||
|
|
||||||
def __init__(self, parent=None):
|
def __init__(self, parent=None):
|
||||||
super().__init__(parent=parent)
|
super().__init__(parent=parent)
|
||||||
@ -186,7 +187,9 @@ class QNamespaceWidget(QtWidgets.QWidget, Ui_Form):
|
|||||||
value_item.setFlags(QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled)
|
value_item.setFlags(QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled)
|
||||||
|
|
||||||
key_item.setData(QtCore.Qt.UserRole, alias)
|
key_item.setData(QtCore.Qt.UserRole, alias)
|
||||||
|
key_item.setData(QtCore.Qt.UserRole+1, entry)
|
||||||
value_item.setData(QtCore.Qt.UserRole, alias)
|
value_item.setData(QtCore.Qt.UserRole, alias)
|
||||||
|
value_item.setData(QtCore.Qt.UserRole+1, entry)
|
||||||
|
|
||||||
row = self.namespace_table.rowCount()
|
row = self.namespace_table.rowCount()
|
||||||
self.namespace_table.setRowCount(row+1)
|
self.namespace_table.setRowCount(row+1)
|
||||||
@ -209,3 +212,4 @@ class QNamespaceWidget(QtWidgets.QWidget, Ui_Form):
|
|||||||
@QtCore.pyqtSlot(QtWidgets.QTableWidgetItem, name='on_namespace_table_itemDoubleClicked')
|
@QtCore.pyqtSlot(QtWidgets.QTableWidgetItem, name='on_namespace_table_itemDoubleClicked')
|
||||||
def item_selected(self, item: QtWidgets.QTableWidgetItem):
|
def item_selected(self, item: QtWidgets.QTableWidgetItem):
|
||||||
self.selected.emit(item.data(QtCore.Qt.UserRole))
|
self.selected.emit(item.data(QtCore.Qt.UserRole))
|
||||||
|
self.sendKey.emit(item.data(QtCore.Qt.UserRole+1))
|
||||||
|
45
nmreval/gui_qt/lib/spinboxes.py
Normal file
45
nmreval/gui_qt/lib/spinboxes.py
Normal file
@ -0,0 +1,45 @@
|
|||||||
|
from math import inf
|
||||||
|
|
||||||
|
from ..Qt import QtWidgets, QtGui
|
||||||
|
|
||||||
|
|
||||||
|
class SciSpinBox(QtWidgets.QDoubleSpinBox):
|
||||||
|
def __init__(self, parent=None):
|
||||||
|
super().__init__(parent=parent)
|
||||||
|
|
||||||
|
self.validator = QtGui.QDoubleValidator(self)
|
||||||
|
|
||||||
|
self.setMinimum(-inf)
|
||||||
|
self.setMaximum(inf)
|
||||||
|
self.setDecimals(1000)
|
||||||
|
self.precision = 0.001
|
||||||
|
|
||||||
|
self._prev_value = float(self.lineEdit().text())
|
||||||
|
|
||||||
|
def valueFromText(self, text: str) -> float:
|
||||||
|
try:
|
||||||
|
self._prev_value = float(self.cleanText())
|
||||||
|
except ValueError:
|
||||||
|
pass
|
||||||
|
return self._prev_value
|
||||||
|
|
||||||
|
def textFromValue(self, value: float) -> str:
|
||||||
|
if value == 0:
|
||||||
|
return '0'
|
||||||
|
else:
|
||||||
|
return f'{value:.3e}'
|
||||||
|
|
||||||
|
def stepBy(self, step: int):
|
||||||
|
self._prev_value = self.value()
|
||||||
|
|
||||||
|
new_value = self._prev_value
|
||||||
|
if new_value != 0.0:
|
||||||
|
new_value *= 10**(step/19.)
|
||||||
|
else:
|
||||||
|
new_value = 0.001
|
||||||
|
|
||||||
|
self.setValue(new_value)
|
||||||
|
self.lineEdit().setText(f'{new_value:.3e}')
|
||||||
|
|
||||||
|
def validate(self, text, pos):
|
||||||
|
return self.validator.validate(text, pos)
|
@ -1,4 +1,3 @@
|
|||||||
from math import inf
|
|
||||||
from contextlib import contextmanager
|
from contextlib import contextmanager
|
||||||
from numpy import linspace
|
from numpy import linspace
|
||||||
from scipy.interpolate import interp1d
|
from scipy.interpolate import interp1d
|
||||||
@ -17,48 +16,6 @@ def busy_cursor():
|
|||||||
QtWidgets.QApplication.restoreOverrideCursor()
|
QtWidgets.QApplication.restoreOverrideCursor()
|
||||||
|
|
||||||
|
|
||||||
class SciSpinBox(QtWidgets.QDoubleSpinBox):
|
|
||||||
def __init__(self, parent=None):
|
|
||||||
super().__init__(parent=parent)
|
|
||||||
|
|
||||||
self.validator = QtGui.QDoubleValidator(self)
|
|
||||||
|
|
||||||
self.setMinimum(-inf)
|
|
||||||
self.setMaximum(inf)
|
|
||||||
self.setDecimals(1000)
|
|
||||||
self.precision = 0.001
|
|
||||||
|
|
||||||
self._prev_value = float(self.lineEdit().text())
|
|
||||||
|
|
||||||
def valueFromText(self, text: str) -> float:
|
|
||||||
try:
|
|
||||||
self._prev_value = float(self.cleanText())
|
|
||||||
except ValueError:
|
|
||||||
pass
|
|
||||||
return self._prev_value
|
|
||||||
|
|
||||||
def textFromValue(self, value: float) -> str:
|
|
||||||
if value == 0:
|
|
||||||
return '0'
|
|
||||||
else:
|
|
||||||
return f'{value:.3e}'
|
|
||||||
|
|
||||||
def stepBy(self, step: int):
|
|
||||||
self._prev_value = self.value()
|
|
||||||
|
|
||||||
new_value = self._prev_value
|
|
||||||
if new_value != 0.0:
|
|
||||||
new_value *= 10**(step/19.)
|
|
||||||
else:
|
|
||||||
new_value = 0.001
|
|
||||||
|
|
||||||
self.setValue(new_value)
|
|
||||||
self.lineEdit().setText(f'{new_value:.3e}')
|
|
||||||
|
|
||||||
def validate(self, text, pos):
|
|
||||||
return self.validator.validate(text, pos)
|
|
||||||
|
|
||||||
|
|
||||||
class RdBuCMap:
|
class RdBuCMap:
|
||||||
# taken from Excel sheet from colorbrewer.org
|
# taken from Excel sheet from colorbrewer.org
|
||||||
_rdbu = [
|
_rdbu = [
|
||||||
|
@ -714,6 +714,7 @@ class NMRMainWindow(QtWidgets.QMainWindow, Ui_BaseWindow):
|
|||||||
|
|
||||||
@QtCore.pyqtSlot(str)
|
@QtCore.pyqtSlot(str)
|
||||||
def do_preview(self, mode):
|
def do_preview(self, mode):
|
||||||
|
|
||||||
if mode == 'ap':
|
if mode == 'ap':
|
||||||
dialog = QApodDialog(parent=self)
|
dialog = QApodDialog(parent=self)
|
||||||
elif mode == 'ph':
|
elif mode == 'ph':
|
||||||
@ -721,6 +722,8 @@ class NMRMainWindow(QtWidgets.QMainWindow, Ui_BaseWindow):
|
|||||||
else:
|
else:
|
||||||
raise ValueError('Unknown preview mode %s' % str(mode))
|
raise ValueError('Unknown preview mode %s' % str(mode))
|
||||||
|
|
||||||
|
dialog.setRange(*self.current_graph_widget.ranges, self.current_graph_widget.log)
|
||||||
|
|
||||||
for sid in self.current_graph_widget.active:
|
for sid in self.current_graph_widget.active:
|
||||||
data_mode = self.management[sid].mode
|
data_mode = self.management[sid].mode
|
||||||
tobeadded = False
|
tobeadded = False
|
||||||
|
@ -51,6 +51,13 @@ class HdfNode:
|
|||||||
self.children = OrderedDict()
|
self.children = OrderedDict()
|
||||||
self.children[key] = value
|
self.children[key] = value
|
||||||
|
|
||||||
|
def __contains__(self, key):
|
||||||
|
if self.children is None:
|
||||||
|
return False
|
||||||
|
|
||||||
|
return key in self.children
|
||||||
|
|
||||||
|
|
||||||
def clear(self):
|
def clear(self):
|
||||||
self.name = ''
|
self.name = ''
|
||||||
self.type = 'group'
|
self.type = 'group'
|
||||||
@ -386,3 +393,7 @@ class HdfReader(HdfNode):
|
|||||||
pass
|
pass
|
||||||
|
|
||||||
return value
|
return value
|
||||||
|
|
||||||
|
def get_scripts(self) -> tuple[str, str]:
|
||||||
|
return unicode_(self.file['scripts/experiment_script'][()]), \
|
||||||
|
unicode_(self.file['scripts/result_script'][()])
|
||||||
|
@ -296,8 +296,8 @@ def _kww_sin_single(w, tau, beta):
|
|||||||
|
|
||||||
sign = np.sign(_w)
|
sign = np.sign(_w)
|
||||||
|
|
||||||
low_approx = _w < _kwwc_lim_low(beta)
|
low_approx = _w < _kwws_lim_low(beta)
|
||||||
high_approx = _w > _kwwc_lim_hig(beta)
|
high_approx = _w > _kwws_lim_hig(beta)
|
||||||
mid_integration = ~(low_approx | high_approx)
|
mid_integration = ~(low_approx | high_approx)
|
||||||
|
|
||||||
ret_val = np.zeros_like(_w, dtype=float)
|
ret_val = np.zeros_like(_w, dtype=float)
|
||||||
|
@ -79,9 +79,10 @@ def logft_sin(x, y, new_x=None):
|
|||||||
def logft_cmplx(x, y, new_x=None, backward: bool = False):
|
def logft_cmplx(x, y, new_x=None, backward: bool = False):
|
||||||
n = x.size
|
n = x.size
|
||||||
if new_x is None:
|
if new_x is None:
|
||||||
new_x = 2 * np.pi * np.logspace(-np.log10(np.max(x)), -np.log10(np.min(x)), num=n)
|
new_x = 2 * np.pi * np.geomspace(1/np.max(x), 1/np.min(x), num=n)
|
||||||
|
|
||||||
dydx = np.diff(y) / np.diff(x)
|
dydx = np.diff(y) / np.diff(x)
|
||||||
|
|
||||||
sign = 2*backward - 1
|
sign = 2*backward - 1
|
||||||
if n < 5000:
|
if n < 5000:
|
||||||
wt = new_x[:, None] * x[None, :]
|
wt = new_x[:, None] * x[None, :]
|
||||||
|
@ -5,6 +5,9 @@ Fit functions (:mod:`nmreval.models`)
|
|||||||
|
|
||||||
.. currentmodule:: nmreval.models
|
.. currentmodule:: nmreval.models
|
||||||
|
|
||||||
|
Basic functions
|
||||||
|
^^^^^^^^^^^^^^^
|
||||||
|
|
||||||
.. autosummary::
|
.. autosummary::
|
||||||
:toctree: generated
|
:toctree: generated
|
||||||
:nosignatures:
|
:nosignatures:
|
||||||
@ -20,6 +23,14 @@ Fit functions (:mod:`nmreval.models`)
|
|||||||
Log
|
Log
|
||||||
Sine
|
Sine
|
||||||
|
|
||||||
|
Correlation functions
|
||||||
|
^^^^^^^^^^^^^^^^^^^^^
|
||||||
|
|
||||||
|
.. autosummary::
|
||||||
|
:toctree: generated
|
||||||
|
|
||||||
|
Exponential
|
||||||
|
|
||||||
"""
|
"""
|
||||||
|
|
||||||
from .basic import *
|
from .basic import *
|
||||||
|
@ -88,7 +88,33 @@ class EpsInfty:
|
|||||||
return ret_val
|
return ret_val
|
||||||
|
|
||||||
|
|
||||||
class CCwithHFW:
|
class _HNWithHF:
|
||||||
|
name = 'HN + HF wing'
|
||||||
|
type = 'Dielectric Spectroscopy'
|
||||||
|
equation = r'\Delta\epsilon HN(\omega, \tau, \alpha, \gamma) / CD(\omega, \tau_{c}, \alpha\gamma-\delta)'
|
||||||
|
params = [r'\Delta\epsilon', r'\tau', r'\alpha', r'\gamma', r'\tau_{c}', '\delta']
|
||||||
|
bounds = [(0, None), (0, None), (0, 1), (0, 1), (0, None), (0, 1)]
|
||||||
|
iscomplex = True
|
||||||
|
|
||||||
|
@staticmethod
|
||||||
|
def func(x, deps, tau, alpha, gamma, tauc, delta, complex_mode: int = 0):
|
||||||
|
w = 2 * np.pi * x
|
||||||
|
numerator = (1 + 1j*w*tauc) ** (gamma-delta)
|
||||||
|
denominator = (1 + (1j*w*tau)**alpha) ** gamma
|
||||||
|
|
||||||
|
epsilon = deps * np.conjugate(numerator / denominator)
|
||||||
|
|
||||||
|
if complex_mode == 0:
|
||||||
|
return epsilon
|
||||||
|
elif complex_mode == 1:
|
||||||
|
return epsilon.real
|
||||||
|
elif complex_mode == 2:
|
||||||
|
return epsilon.imag
|
||||||
|
else:
|
||||||
|
raise ValueError(f'{complex_mode!r} has not value 0, 1, or 2')
|
||||||
|
|
||||||
|
|
||||||
|
class CCWithHF:
|
||||||
name = 'CC + HF wing'
|
name = 'CC + HF wing'
|
||||||
type = 'Dielectric Spectroscopy'
|
type = 'Dielectric Spectroscopy'
|
||||||
equation = r'\Delta\epsilon CC(\omega, \tau, \alpha) / CD(\omega, \tau_{c}, \beta-\delta)'
|
equation = r'\Delta\epsilon CC(\omega, \tau, \alpha) / CD(\omega, \tau_{c}, \beta-\delta)'
|
||||||
@ -98,23 +124,10 @@ class CCwithHFW:
|
|||||||
|
|
||||||
@staticmethod
|
@staticmethod
|
||||||
def func(x, deps, tau, alpha, tauc, delta, complex_mode: int = 0):
|
def func(x, deps, tau, alpha, tauc, delta, complex_mode: int = 0):
|
||||||
w = 2*np.pi*x
|
return _HNWithHF.func(x, deps, tau, alpha, 1, tauc, delta, complex_mode=complex_mode)
|
||||||
numerator = (1 + 1j*w*tauc)**(alpha-delta)
|
|
||||||
denominator = 1 + (1j*w*tau)**alpha
|
|
||||||
|
|
||||||
epsilon = deps * np.conjugate(numerator / denominator)
|
|
||||||
|
|
||||||
if complex_mode == 0:
|
|
||||||
return epsilon
|
|
||||||
elif complex_mode == 1:
|
|
||||||
return epsilon.real
|
|
||||||
elif complex_mode == 2:
|
|
||||||
return epsilon.imag
|
|
||||||
else:
|
|
||||||
raise ValueError(f'{complex_mode!r} has not value 0, 1, or 2')
|
|
||||||
|
|
||||||
|
|
||||||
class CDwithHFW:
|
class CDWithHF:
|
||||||
name = 'CD + HF wing'
|
name = 'CD + HF wing'
|
||||||
type = 'Dielectric Spectroscopy'
|
type = 'Dielectric Spectroscopy'
|
||||||
equation = r'\Delta\epsilon CD(\omega, \tau, \gamma) / CD(\omega, \tau_{c}, \gamma-\delta)'
|
equation = r'\Delta\epsilon CD(\omega, \tau, \gamma) / CD(\omega, \tau_{c}, \gamma-\delta)'
|
||||||
@ -124,20 +137,7 @@ class CDwithHFW:
|
|||||||
|
|
||||||
@staticmethod
|
@staticmethod
|
||||||
def func(x, deps, tau, gamma, tauc, delta, complex_mode: int = 0):
|
def func(x, deps, tau, gamma, tauc, delta, complex_mode: int = 0):
|
||||||
w = 2*np.pi*x
|
return _HNWithHF.func(x, deps, tau, 1, gamma, tauc, delta, complex_mode=complex_mode)
|
||||||
numerator = (1 + 1j*w*tauc)**(gamma-delta)
|
|
||||||
denominator = (1 + 1j*w*tau)**gamma
|
|
||||||
|
|
||||||
epsilon = deps * np.conjugate(numerator / denominator)
|
|
||||||
|
|
||||||
if complex_mode == 0:
|
|
||||||
return epsilon
|
|
||||||
elif complex_mode == 1:
|
|
||||||
return epsilon.real
|
|
||||||
elif complex_mode == 2:
|
|
||||||
return epsilon.imag
|
|
||||||
else:
|
|
||||||
raise ValueError(f'{complex_mode!r} has not value 0, 1, or 2')
|
|
||||||
|
|
||||||
|
|
||||||
class PowerLawBDS:
|
class PowerLawBDS:
|
||||||
@ -232,3 +232,52 @@ class DerivativeColeDavidson:
|
|||||||
denom = (1 + omtau**2)**((1+g)/2.)
|
denom = (1 + omtau**2)**((1+g)/2.)
|
||||||
|
|
||||||
return eps * np.pi * numer / denom / 2.
|
return eps * np.pi * numer / denom / 2.
|
||||||
|
|
||||||
|
|
||||||
|
class _DerivativeHNWithHF:
|
||||||
|
name = 'Derivative (HN + HF wing)'
|
||||||
|
type = 'Dielectric Spectroscopy'
|
||||||
|
params = [r'\Delta\epsilon', r'\tau', r'\alpha', r'\gamma', r'\tau_{c}', r'\delta']
|
||||||
|
bounds = [(0, None), (0, None), (0, 1), (0, 1), (0, None), (0, 1)]
|
||||||
|
|
||||||
|
@staticmethod
|
||||||
|
def func(x, deps, tau, alpha, gamma, tauc, delta):
|
||||||
|
w = 2*np.pi*x
|
||||||
|
|
||||||
|
a_pi2 = alpha*np.pi/2
|
||||||
|
w_lamb = (w*tau)**alpha
|
||||||
|
w_mu = w*tauc
|
||||||
|
|
||||||
|
ag_d = alpha*gamma - delta
|
||||||
|
|
||||||
|
phi = np.sin(a_pi2) * w_lamb / (1+np.cos(a_pi2) * w_lamb)
|
||||||
|
chi = ag_d*np.arctan(w_mu) - gamma*np.arctan(phi)
|
||||||
|
m_squared = 1 + w_mu**2
|
||||||
|
l_squared = 1 + 2*np.cos(a_pi2)*w_lamb + w_lamb**2
|
||||||
|
|
||||||
|
term1 = (ag_d * w_mu**2 / m_squared - alpha*gamma * w_lamb * (w_lamb + np.cos(a_pi2)) / l_squared) * np.cos(chi)
|
||||||
|
term2 = (ag_d * w_mu / m_squared - alpha*gamma*np.sin(a_pi2) * w_lamb / l_squared) * np.sin(chi)
|
||||||
|
|
||||||
|
return deps * (term2 - term1) * m_squared**(ag_d/2) / l_squared**(gamma/2)
|
||||||
|
|
||||||
|
|
||||||
|
class DerivativeCCWithHF:
|
||||||
|
name = 'Derivative (CC + HF wing)'
|
||||||
|
type = 'Dielectric Spectroscopy'
|
||||||
|
params = [r'\Delta\epsilon', r'\tau', r'\alpha', r'\tau_{c}', r'\delta']
|
||||||
|
bounds = [(0, None), (0, None), (0, 1), (0, None), (0, 1)]
|
||||||
|
|
||||||
|
@staticmethod
|
||||||
|
def func(x, deps, tau, alpha, tauc, delta):
|
||||||
|
return _DerivativeHNWithHF.func(x, deps, tau, alpha, 1, tauc, delta)
|
||||||
|
|
||||||
|
|
||||||
|
class DerivativeCDWithHF:
|
||||||
|
name = 'Derivative (CD + HF wing)'
|
||||||
|
type = 'Dielectric Spectroscopy'
|
||||||
|
params = [r'\Delta\epsilon', r'\tau', r'\gamma', r'\tau_{c}', r'\delta']
|
||||||
|
bounds = [(0, None), (0, None), (0, 1), (0, None), (0, 1)]
|
||||||
|
|
||||||
|
@staticmethod
|
||||||
|
def func(x, deps, tau, gamma, tauc, delta):
|
||||||
|
return _DerivativeHNWithHF.func(x, deps, tau, 1, gamma, tauc, delta)
|
||||||
|
@ -1,3 +1,11 @@
|
|||||||
|
"""
|
||||||
|
*********************
|
||||||
|
Correlation functions
|
||||||
|
*********************
|
||||||
|
|
||||||
|
Decay functions (KWW, ML,...)
|
||||||
|
"""
|
||||||
|
|
||||||
import numpy as np
|
import numpy as np
|
||||||
from scipy.special import gammaincc
|
from scipy.special import gammaincc
|
||||||
|
|
||||||
@ -5,6 +13,9 @@ from ..math.mittagleffler import mlf
|
|||||||
|
|
||||||
|
|
||||||
class Exponential:
|
class Exponential:
|
||||||
|
"""
|
||||||
|
Stretched exponential function
|
||||||
|
"""
|
||||||
type = 'Correlation function'
|
type = 'Correlation function'
|
||||||
name = 'Stretched Exponential'
|
name = 'Stretched Exponential'
|
||||||
equation = r'C*exp(-(x/\tau)^{\beta})'
|
equation = r'C*exp(-(x/\tau)^{\beta})'
|
||||||
@ -12,6 +23,18 @@ class Exponential:
|
|||||||
|
|
||||||
@staticmethod
|
@staticmethod
|
||||||
def func(x, c, x0, beta):
|
def func(x, c, x0, beta):
|
||||||
|
r"""
|
||||||
|
Stretched exponential function
|
||||||
|
|
||||||
|
.. math::
|
||||||
|
x = c\exp(-x/x_0)
|
||||||
|
|
||||||
|
Args:
|
||||||
|
x (array-like): Input values
|
||||||
|
c (float): Amplitude
|
||||||
|
x0 (float):
|
||||||
|
beta (float): Stretching parameter
|
||||||
|
"""
|
||||||
return c*np.exp(-(x/x0)**beta)
|
return c*np.exp(-(x/x0)**beta)
|
||||||
|
|
||||||
|
|
||||||
|
@ -49,7 +49,7 @@ class ColeColeFC(_AbstractFC):
|
|||||||
relax = Relaxation(distribution=ColeCole)
|
relax = Relaxation(distribution=ColeCole)
|
||||||
|
|
||||||
|
|
||||||
class ColeDavidsionFC(_AbstractFC):
|
class ColeDavidsonFC(_AbstractFC):
|
||||||
name = 'Cole-Davidson'
|
name = 'Cole-Davidson'
|
||||||
params = _AbstractFC.params + [r'\gamma']
|
params = _AbstractFC.params + [r'\gamma']
|
||||||
bounds = _AbstractFC.bounds + [(0, 1)]
|
bounds = _AbstractFC.bounds + [(0, 1)]
|
||||||
|
@ -4,5 +4,5 @@ scipy
|
|||||||
pyqtgraph
|
pyqtgraph
|
||||||
bsddb3
|
bsddb3
|
||||||
h5py
|
h5py
|
||||||
PyQt5
|
pyqt
|
||||||
|
|
||||||
|
@ -176,6 +176,9 @@
|
|||||||
</property>
|
</property>
|
||||||
<item row="5" column="1">
|
<item row="5" column="1">
|
||||||
<widget class="QDoubleSpinBox" name="ph1slider">
|
<widget class="QDoubleSpinBox" name="ph1slider">
|
||||||
|
<property name="wrapping">
|
||||||
|
<bool>true</bool>
|
||||||
|
</property>
|
||||||
<property name="minimum">
|
<property name="minimum">
|
||||||
<double>-360.000000000000000</double>
|
<double>-360.000000000000000</double>
|
||||||
</property>
|
</property>
|
||||||
@ -229,6 +232,9 @@
|
|||||||
<verstretch>0</verstretch>
|
<verstretch>0</verstretch>
|
||||||
</sizepolicy>
|
</sizepolicy>
|
||||||
</property>
|
</property>
|
||||||
|
<property name="wrapping">
|
||||||
|
<bool>true</bool>
|
||||||
|
</property>
|
||||||
<property name="minimum">
|
<property name="minimum">
|
||||||
<double>-180.000000000000000</double>
|
<double>-180.000000000000000</double>
|
||||||
</property>
|
</property>
|
||||||
|
@ -13,21 +13,32 @@
|
|||||||
<property name="windowTitle">
|
<property name="windowTitle">
|
||||||
<string>View HDF file</string>
|
<string>View HDF file</string>
|
||||||
</property>
|
</property>
|
||||||
|
<layout class="QVBoxLayout" name="verticalLayout_2">
|
||||||
|
<item>
|
||||||
|
<widget class="QLabel" name="label_3">
|
||||||
|
<property name="text">
|
||||||
|
<string><html><head/><body><p><span style=" color:#000000;">Colors: </span><span style=" color:#1f77b4;">Time signals and spectra</span><span style=" color:#000000;">, </span><span style=" color:#ff7f0e;">accumulations</span></p></body></html></string>
|
||||||
|
</property>
|
||||||
|
<property name="textFormat">
|
||||||
|
<enum>Qt::RichText</enum>
|
||||||
|
</property>
|
||||||
|
</widget>
|
||||||
|
</item>
|
||||||
|
<item>
|
||||||
|
<widget class="QSplitter" name="splitter">
|
||||||
|
<property name="orientation">
|
||||||
|
<enum>Qt::Vertical</enum>
|
||||||
|
</property>
|
||||||
|
<property name="childrenCollapsible">
|
||||||
|
<bool>false</bool>
|
||||||
|
</property>
|
||||||
|
<widget class="QWidget" name="horizontalLayoutWidget">
|
||||||
<layout class="QVBoxLayout" name="verticalLayout">
|
<layout class="QVBoxLayout" name="verticalLayout">
|
||||||
<property name="spacing">
|
<property name="spacing">
|
||||||
<number>3</number>
|
<number>0</number>
|
||||||
</property>
|
|
||||||
<property name="leftMargin">
|
|
||||||
<number>4</number>
|
|
||||||
</property>
|
|
||||||
<property name="topMargin">
|
|
||||||
<number>4</number>
|
|
||||||
</property>
|
|
||||||
<property name="rightMargin">
|
|
||||||
<number>4</number>
|
|
||||||
</property>
|
</property>
|
||||||
<property name="bottomMargin">
|
<property name="bottomMargin">
|
||||||
<number>4</number>
|
<number>0</number>
|
||||||
</property>
|
</property>
|
||||||
<item>
|
<item>
|
||||||
<layout class="QVBoxLayout" name="verticalLayout_3"/>
|
<layout class="QVBoxLayout" name="verticalLayout_3"/>
|
||||||
@ -50,9 +61,6 @@
|
|||||||
<property name="spacing">
|
<property name="spacing">
|
||||||
<number>2</number>
|
<number>2</number>
|
||||||
</property>
|
</property>
|
||||||
<item row="1" column="1">
|
|
||||||
<widget class="QComboBox" name="comboBox_2"/>
|
|
||||||
</item>
|
|
||||||
<item row="0" column="0">
|
<item row="0" column="0">
|
||||||
<widget class="QLabel" name="label">
|
<widget class="QLabel" name="label">
|
||||||
<property name="text">
|
<property name="text">
|
||||||
@ -60,6 +68,9 @@
|
|||||||
</property>
|
</property>
|
||||||
</widget>
|
</widget>
|
||||||
</item>
|
</item>
|
||||||
|
<item row="1" column="1">
|
||||||
|
<widget class="QComboBox" name="comboBox_2"/>
|
||||||
|
</item>
|
||||||
<item row="1" column="0">
|
<item row="1" column="0">
|
||||||
<widget class="QLabel" name="label_2">
|
<widget class="QLabel" name="label_2">
|
||||||
<property name="text">
|
<property name="text">
|
||||||
@ -73,8 +84,17 @@
|
|||||||
</layout>
|
</layout>
|
||||||
</widget>
|
</widget>
|
||||||
</item>
|
</item>
|
||||||
<item>
|
</layout>
|
||||||
<widget class="ExpandableWidget" name="widget_2" native="true"/>
|
</widget>
|
||||||
|
<widget class="ExpandableWidget" name="widget_2" native="true">
|
||||||
|
<property name="sizePolicy">
|
||||||
|
<sizepolicy hsizetype="Preferred" vsizetype="MinimumExpanding">
|
||||||
|
<horstretch>0</horstretch>
|
||||||
|
<verstretch>0</verstretch>
|
||||||
|
</sizepolicy>
|
||||||
|
</property>
|
||||||
|
</widget>
|
||||||
|
</widget>
|
||||||
</item>
|
</item>
|
||||||
<item>
|
<item>
|
||||||
<widget class="QDialogButtonBox" name="buttonBox">
|
<widget class="QDialogButtonBox" name="buttonBox">
|
||||||
|
@ -69,6 +69,9 @@
|
|||||||
<verstretch>0</verstretch>
|
<verstretch>0</verstretch>
|
||||||
</sizepolicy>
|
</sizepolicy>
|
||||||
</property>
|
</property>
|
||||||
|
<property name="wrapping">
|
||||||
|
<bool>true</bool>
|
||||||
|
</property>
|
||||||
<property name="minimum">
|
<property name="minimum">
|
||||||
<double>-180.000000000000000</double>
|
<double>-180.000000000000000</double>
|
||||||
</property>
|
</property>
|
||||||
@ -95,6 +98,9 @@
|
|||||||
<verstretch>0</verstretch>
|
<verstretch>0</verstretch>
|
||||||
</sizepolicy>
|
</sizepolicy>
|
||||||
</property>
|
</property>
|
||||||
|
<property name="wrapping">
|
||||||
|
<bool>true</bool>
|
||||||
|
</property>
|
||||||
<property name="minimum">
|
<property name="minimum">
|
||||||
<double>-360.000000000000000</double>
|
<double>-360.000000000000000</double>
|
||||||
</property>
|
</property>
|
||||||
|
@ -96,14 +96,27 @@
|
|||||||
</layout>
|
</layout>
|
||||||
</item>
|
</item>
|
||||||
<item>
|
<item>
|
||||||
<layout class="QGridLayout" name="gridLayout">
|
<widget class="Line" name="line">
|
||||||
<property name="topMargin">
|
<property name="frameShadow">
|
||||||
<number>0</number>
|
<enum>QFrame::Raised</enum>
|
||||||
</property>
|
</property>
|
||||||
|
<property name="lineWidth">
|
||||||
|
<number>3</number>
|
||||||
|
</property>
|
||||||
|
<property name="orientation">
|
||||||
|
<enum>Qt::Horizontal</enum>
|
||||||
|
</property>
|
||||||
|
</widget>
|
||||||
|
</item>
|
||||||
|
<item>
|
||||||
|
<layout class="QHBoxLayout" name="horizontalLayout_2">
|
||||||
<property name="spacing">
|
<property name="spacing">
|
||||||
<number>3</number>
|
<number>3</number>
|
||||||
</property>
|
</property>
|
||||||
<item row="0" column="0" colspan="2">
|
<property name="topMargin">
|
||||||
|
<number>0</number>
|
||||||
|
</property>
|
||||||
|
<item>
|
||||||
<widget class="QPushButton" name="add_button">
|
<widget class="QPushButton" name="add_button">
|
||||||
<property name="text">
|
<property name="text">
|
||||||
<string>Add row</string>
|
<string>Add row</string>
|
||||||
@ -114,7 +127,7 @@
|
|||||||
</property>
|
</property>
|
||||||
</widget>
|
</widget>
|
||||||
</item>
|
</item>
|
||||||
<item row="0" column="2" colspan="2">
|
<item>
|
||||||
<widget class="QPushButton" name="delete_button">
|
<widget class="QPushButton" name="delete_button">
|
||||||
<property name="text">
|
<property name="text">
|
||||||
<string>Delete rows</string>
|
<string>Delete rows</string>
|
||||||
@ -125,14 +138,34 @@
|
|||||||
</property>
|
</property>
|
||||||
</widget>
|
</widget>
|
||||||
</item>
|
</item>
|
||||||
<item row="0" column="4" colspan="2">
|
<item>
|
||||||
<widget class="QPushButton" name="split_button">
|
<widget class="QPushButton" name="split_button">
|
||||||
<property name="text">
|
<property name="text">
|
||||||
<string>Split after selection</string>
|
<string>Split after selection</string>
|
||||||
</property>
|
</property>
|
||||||
</widget>
|
</widget>
|
||||||
</item>
|
</item>
|
||||||
<item row="1" column="0" colspan="3">
|
</layout>
|
||||||
|
</item>
|
||||||
|
<item>
|
||||||
|
<widget class="Line" name="line_2">
|
||||||
|
<property name="lineWidth">
|
||||||
|
<number>3</number>
|
||||||
|
</property>
|
||||||
|
<property name="orientation">
|
||||||
|
<enum>Qt::Horizontal</enum>
|
||||||
|
</property>
|
||||||
|
</widget>
|
||||||
|
</item>
|
||||||
|
<item>
|
||||||
|
<layout class="QHBoxLayout" name="horizontalLayout_3">
|
||||||
|
<property name="spacing">
|
||||||
|
<number>3</number>
|
||||||
|
</property>
|
||||||
|
<property name="topMargin">
|
||||||
|
<number>0</number>
|
||||||
|
</property>
|
||||||
|
<item>
|
||||||
<widget class="QPushButton" name="mask_button">
|
<widget class="QPushButton" name="mask_button">
|
||||||
<property name="toolTip">
|
<property name="toolTip">
|
||||||
<string><html><head/><body><p>Masked rows are shown in green</p></body></html></string>
|
<string><html><head/><body><p>Masked rows are shown in green</p></body></html></string>
|
||||||
@ -142,7 +175,7 @@
|
|||||||
</property>
|
</property>
|
||||||
</widget>
|
</widget>
|
||||||
</item>
|
</item>
|
||||||
<item row="1" column="3" colspan="3">
|
<item>
|
||||||
<widget class="QPushButton" name="unmaskbutton">
|
<widget class="QPushButton" name="unmaskbutton">
|
||||||
<property name="text">
|
<property name="text">
|
||||||
<string>Show all</string>
|
<string>Show all</string>
|
||||||
|
47
setup.cfg
47
setup.cfg
@ -1,47 +0,0 @@
|
|||||||
[metadata]
|
|
||||||
name = nmreval
|
|
||||||
version = 0.1
|
|
||||||
description = Evaluation of data
|
|
||||||
long_description = file: README.md
|
|
||||||
author = Dominik Demuth
|
|
||||||
author_email = dominik.demuth@physik.tu-darmstadt.de
|
|
||||||
install_requires =
|
|
||||||
numpy
|
|
||||||
scipy
|
|
||||||
matplotlib
|
|
||||||
bsddb3
|
|
||||||
pyqtgraph
|
|
||||||
pyqt
|
|
||||||
h5py
|
|
||||||
keywords = nmr, physics, science
|
|
||||||
classifiers =
|
|
||||||
Development Status :: 3 - Alpha
|
|
||||||
Intended Audience :: End Users/Desktop
|
|
||||||
Intended Audience :: Science/Research
|
|
||||||
Topic :: Scientific/Engineering :: Physics
|
|
||||||
Topic :: Scientific/Engineering :: Visualization
|
|
||||||
Programming Language :: Python :: 3
|
|
||||||
Programming Language :: Python :: 3.7
|
|
||||||
Programming Language :: Python :: 3.8
|
|
||||||
Programming Language :: Python :: 3.9
|
|
||||||
Programming Language :: Python :: 3.10
|
|
||||||
Programming Language :: Python :: 3 :: Only
|
|
||||||
license = BSD 3-Clause License
|
|
||||||
|
|
||||||
[options]
|
|
||||||
include_package_data = True
|
|
||||||
packages = find:
|
|
||||||
scripts = bin/evaluate.py
|
|
||||||
|
|
||||||
[options.packages.find]
|
|
||||||
include =
|
|
||||||
nmreval*
|
|
||||||
resources*
|
|
||||||
|
|
||||||
[options.package_data]
|
|
||||||
* = *.txt, *.npz, *.png, *.json
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
74
setup.py
74
setup.py
@ -1,74 +1,4 @@
|
|||||||
"""A setuptools based setup module.
|
|
||||||
|
|
||||||
See:
|
|
||||||
https://packaging.python.org/guides/distributing-packages-using-setuptools/
|
|
||||||
https://github.com/pypa/sampleproject
|
|
||||||
"""
|
|
||||||
|
|
||||||
# Always prefer setuptools over distutils
|
# Always prefer setuptools over distutils
|
||||||
from setuptools import setup, find_packages
|
from setuptools import setup
|
||||||
import pathlib
|
|
||||||
|
|
||||||
here = pathlib.Path(__file__).parent.resolve()
|
setup()
|
||||||
|
|
||||||
# Get the long description from the README file
|
|
||||||
long_description = (here / 'README.md').read_text(encoding='utf-8')
|
|
||||||
|
|
||||||
# Arguments marked as "Required" below must be included for upload to PyPI.
|
|
||||||
# Fields marked as "Optional" may be commented out.
|
|
||||||
|
|
||||||
setup(
|
|
||||||
# name='nmreval', # Required
|
|
||||||
# version='0.1', # Required
|
|
||||||
# description='A sample Python project', # Optional
|
|
||||||
# long_description=long_description, # Optional
|
|
||||||
# long_description_content_type='text/markdown', # Optional (see note above)
|
|
||||||
# url='https://chaos3.fkp.physik.tu-darmstadt.de/source/nmreval/', # Optional
|
|
||||||
# author='Dominik Demuth', # Optional
|
|
||||||
# author_email='dominik.demuth@physik.tu-darmstadt.de', # Optional
|
|
||||||
# classifiers=[ # Optional
|
|
||||||
# 'Development Status :: 3 - Alpha',
|
|
||||||
# 'Intended Audience :: End Users/Desktop',
|
|
||||||
# 'Intended Audience :: Science/Research',
|
|
||||||
# 'Topic :: Scientific/Engineering :: Physics',
|
|
||||||
# 'Topic :: Scientific/Engineering :: Visualization',
|
|
||||||
# 'License :: OSI Approved :: BSD 3-Clause License',
|
|
||||||
# 'Programming Language :: Python :: 3',
|
|
||||||
# 'Programming Language :: Python :: 3.7',
|
|
||||||
# 'Programming Language :: Python :: 3.8',
|
|
||||||
# 'Programming Language :: Python :: 3.9',
|
|
||||||
# "Programming Language :: Python :: 3.10",
|
|
||||||
# 'Programming Language :: Python :: 3 :: Only',
|
|
||||||
# ],
|
|
||||||
#
|
|
||||||
# keywords='nmr, physics, science', # Optional
|
|
||||||
# package_dir={'': '.'}, # Optional
|
|
||||||
# packages=find_packages(where='.'), # Required
|
|
||||||
# include_package_data=True,
|
|
||||||
# python_requires='>=3.7',
|
|
||||||
# install_requires=[
|
|
||||||
# 'numpy',
|
|
||||||
# 'scipy',
|
|
||||||
# 'matplotlib',
|
|
||||||
# 'bsddb3',
|
|
||||||
# 'pyqtgraph',
|
|
||||||
# 'pyqt',
|
|
||||||
# 'h5py'
|
|
||||||
# ], # Optional
|
|
||||||
# # extras_require={ # Optional
|
|
||||||
# # 'dev': ['check-manifest'],
|
|
||||||
# # 'test': ['coverage'],
|
|
||||||
# # },
|
|
||||||
# package_data={ # Optional
|
|
||||||
# 'sample': ['package_data.dat'],
|
|
||||||
# },
|
|
||||||
# data_files=[('my_data', ['data/data_file'])], # Optional
|
|
||||||
# entry_points={ # Optional
|
|
||||||
# 'console_scripts': [
|
|
||||||
# 'evaluate=bin:evaluate',
|
|
||||||
# ],
|
|
||||||
# },
|
|
||||||
# project_urls={ # Optional
|
|
||||||
# 'Source': 'https://chaos3.fkp.physik.tu-darmstadt.de/source/nmreval/',
|
|
||||||
# },
|
|
||||||
)
|
|
||||||
|
Loading…
Reference in New Issue
Block a user