forked from IPKM/nmreval
167 lines
4.4 KiB
Python
167 lines
4.4 KiB
Python
from __future__ import annotations
|
|
|
|
from numbers import Number
|
|
from itertools import count
|
|
|
|
import numpy as np
|
|
|
|
|
|
class Parameters(dict):
|
|
count = count()
|
|
|
|
def __str__(self):
|
|
return 'Parameters:\n' + '\n'.join([str(k)+': '+str(v) for k, v in self.items()])
|
|
|
|
def __getitem__(self, item):
|
|
if isinstance(item, (list, tuple, np.ndarray)):
|
|
values = []
|
|
for item_i in item:
|
|
values.append(super().__getitem__(item_i))
|
|
return values
|
|
else:
|
|
return super().__getitem__(item)
|
|
|
|
@staticmethod
|
|
def _prep_bounds(val, p_len: int) -> list:
|
|
# helper function to ensure that bounds and variable are of parameter shape
|
|
if isinstance(val, (Number, bool)) or val is None:
|
|
return [val] * p_len
|
|
|
|
elif len(val) == p_len:
|
|
return val
|
|
|
|
elif len(val) == 1:
|
|
return [val[0]] * p_len
|
|
|
|
else:
|
|
raise ValueError('Input {} has wrong dimensions'.format(val))
|
|
|
|
def add_parameter(self, param, var=None, lb=None, ub=None):
|
|
if isinstance(param, Number):
|
|
param = [param]
|
|
|
|
p_len = len(param)
|
|
|
|
# make list if only single value is given
|
|
var = self._prep_bounds(var, p_len)
|
|
lb = self._prep_bounds(lb, p_len)
|
|
ub = self._prep_bounds(ub, p_len)
|
|
|
|
new_keys = []
|
|
for i in range(p_len):
|
|
new_idx = next(self.count)
|
|
new_keys.append(new_idx)
|
|
|
|
self[new_idx] = Parameter(param[i], var=var[i], lb=lb[i], ub=ub[i])
|
|
|
|
return new_keys
|
|
|
|
def copy(self):
|
|
p = Parameters()
|
|
for k, v in self.items():
|
|
p[k] = Parameter(v.value, var=v.var, lb=v.lb, ub=v.ub)
|
|
|
|
if len(p) == 0:
|
|
return p
|
|
|
|
max_k = max(p.keys())
|
|
c = next(p.count)
|
|
while c < max_k:
|
|
c = next(p.count)
|
|
|
|
return p
|
|
|
|
def get_state(self):
|
|
return {k: v.get_state() for k, v in self.items()}
|
|
|
|
|
|
class Parameter:
|
|
"""
|
|
Container for one parameter
|
|
"""
|
|
__slots__ = ['name', 'value', 'error', 'init_val', 'var', 'lb', 'ub', 'scale', 'function']
|
|
|
|
def __init__(self, value: float, var: bool = True, lb: float = -np.inf, ub: float = np.inf):
|
|
self.lb = lb if lb is not None else -np.inf
|
|
self.ub = ub if ub is not None else np.inf
|
|
|
|
if self.lb <= value <= self.ub:
|
|
self.value = value
|
|
else:
|
|
raise ValueError('Value of parameter is outside bounds')
|
|
|
|
self.init_val = value
|
|
|
|
with np.errstate(divide='ignore'):
|
|
# throws RuntimeWarning for zeros
|
|
self.scale = 10**(np.floor(np.log10(np.abs(self.value))))
|
|
|
|
if self.scale == 0:
|
|
self.scale = 1.
|
|
|
|
self.var = bool(var) if var is not None else True
|
|
self.error = None if self.var is False else 0.0
|
|
self.name = ''
|
|
self.function = ''
|
|
|
|
def __str__(self):
|
|
start = ''
|
|
if self.name:
|
|
if self.function:
|
|
start = f'{self.name} ({self.function}): '
|
|
else:
|
|
start = self.name + ': '
|
|
|
|
if self.var:
|
|
return start + f'{self.value:.4g} +/- {self.error:.4g}, init={self.init_val}'
|
|
else:
|
|
return start + f'{self.value:} (fixed)'
|
|
|
|
def __add__(self, other: Parameter | float) -> float:
|
|
if isinstance(other, (float, int)):
|
|
return self.value + other
|
|
elif isinstance(other, Parameter):
|
|
return self.value + other.value
|
|
|
|
def __radd__(self, other: Parameter | float) -> float:
|
|
return self.__add__(other)
|
|
|
|
@property
|
|
def scaled_value(self):
|
|
return self.value / self.scale
|
|
|
|
@scaled_value.setter
|
|
def scaled_value(self, value):
|
|
self.value = value * self.scale
|
|
|
|
@property
|
|
def scaled_error(self):
|
|
if self.error is None:
|
|
return self.error
|
|
else:
|
|
return self.error / self.scale
|
|
|
|
@scaled_error.setter
|
|
def scaled_error(self, value):
|
|
self.error = value * self.scale
|
|
|
|
def get_state(self):
|
|
|
|
return {slot: getattr(self, slot) for slot in self.__slots__}
|
|
|
|
@staticmethod
|
|
def set_state(state: dict):
|
|
par = Parameter(state.pop('value'))
|
|
for k, v in state.items():
|
|
setattr(par, k, v)
|
|
|
|
return par
|
|
|
|
@property
|
|
def full_name(self):
|
|
name = self.name
|
|
if self.function:
|
|
name += ' (' + self.function + ')'
|
|
|
|
return name
|