cmake transition for backends completed; builds now debian package with new debhelper

CMakeLists.txt

@@ -1,10 +1,16 @@
 cmake_minimum_required(VERSION 3.0)
-project(damaris_backends)
+project(damaris-backends)
 
 include(FindPkgConfig)
+include(GNUInstallDirs)
+# http://stackoverflow.com/questions/39481958/setting-cmake-install-prefix-from-cmakelists-txt-file
+#IF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
+#  SET(CMAKE_INSTALL_PREFIX /usr/local CACHE PATH "Set install prefix" FORCE)
+#ENDIF(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
 
 set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wshadow -Wall -O0 -g -DSPC_DEBUG=0")
-
+set(CPACK_PACKAGING_INSTALL_PREFIX "/")
+#set(CMAKE_INSTALL_PREFIX "/")
 
 find_package(EXPAT REQUIRED)
 find_package(PkgConfig REQUIRED)
@@ -15,11 +21,10 @@ pkg_check_modules (XERCES xerces-c REQUIRED)
 include_directories (. ${GLIB2_INCLUDE_DIRS} ${XERCES_INCLUDE_DIRS})
 link_directories (${GLIB2_LIBRARY_DIRS} ${XERCES_LIBRARY_DIRS})
 
-
 add_subdirectory(core)
 #add_subdirectory(doc)
 add_subdirectory(drivers)
-#add_subdirectory(tools)
+add_subdirectory(tools)
 #add_subdirectory(tests)
 add_subdirectory(machines)
 #add_executable(backends ${SOURCE_FILES})

core/xml_states.cpp

@@ -361,7 +361,9 @@ int xml_state_writer::write_states(FILE* output, const state_atom& states_to_wri
         strcat(args, buffer);
     }
 	strcat(args, "/>\n");
-    fprintf(output, args);
+    // fix -Werror=format-security
+    //fprintf(output, args);
+    fputs(args,output);
     return 1;
   }
   fprintf(output,"%s<!-- something missing -->\n",indent_string.c_str());

debian/changelog

@@ -0,0 +1,204 @@
+damaris (0.15) UNRELEASED; urgency=low
+
+  * new SVN pacakges
+  * new SPC driver 
+  * move from xerces-c28 to xerces-c31 (nedded to build on jessie)
+
+ -- Markus Rosenstihl <Markus.Rosenstihl@physik.tu-darmstadt.de>  Fri, 08 Aug 2014 09:49:36 +0100
+
+damaris (0.14-svn730) experimental; urgency=low
+
+  * removed exe extensions from backends
+  * changed default frontend renderer to GTKAgg
+
+ -- Markus Rosenstihl <markusro@deut.fkp.physik.tu-darmstadt.de>  Fri, 28 Jun 2013 17:13:10 +0200
+
+damaris (0.14-svn727) experimental; urgency=low
+
+  * r714 Big Kernel Lock was removed in linux kernel 2.6.39, 
+  * kernel driver adjusted accordingly, compiles on kernel 3.2.0
+  * new driver from Spectrum GmbH for kernel > 2.6.39
+  * DAMARIS builds now in Wheezy
+  * several fixes/more prices warnings in Spectrum and Spincore drivers
+  * external clock impedance not set to 50 Ohms anymore.
+  * (new PB24-64k SP17-revB boards clock is not capable of driveing 50 Ohms)
+  * Stefan: some fixes for the ADC driver:
+    - frequency is not always set correctly, which could lead to TOs, exception
+     added to handle this
+    - gating delay does not appear to be active below 500 kHz, despite manual
+    - gating time is now correctly rounded up to next 10 ns
+
+ -- Markus Rosenstihl <markusro@deut.fkp.physik.tu-darmstadt.de>  Thu, 27 Jun 2013 14:34:24 +0200
+
+damaris (0.14-svn713) experimental; urgency=low
+
+  * added Spectrum M2i40xx Series ADC Cards (Stefan Reutter)
+  * added birgit back end
+
+ -- Markus Rosenstihl <Markus.Rosenstihl@physik.tu-darmstadt.de>  Mon, 11 Mar 2013 15:58:47 +0000
+
+damaris (0.14-svn697) experimental; urgency=low
+
+  * MI40xx driver bugs:
+    - pre-gating implemented for other configurations according to the manual
+    - ADC_Excpetion is thrown if a timeout occured 
+    - timeout is now correct, no need to add extra time in frontend:
+      the card records upto 7 samples more after gating stops
+  * "general" backend: configurable via glib KeyValue config file (follows XDG standard)
+  * added glib-2.0 dependcy for configuration file
+  * backend.conf allows to disable synchronization
+  * backend.conf example in /usr/share/doc/damaris-backends/backend.conf
+
+ -- Markus Rosenstihl <Markus.Rosenstihl@physik.tu-darmstadt.de>  Wed, 21 Nov 2012 09:47:10 +0100
+
+damaris (0.13-0) experimental; urgency=low
+  * Packages are compiling now on squeeze (and Ubuntu 10.04)
+  * fixed /sbin/udevsettle (lenny) vs /sbin/udevadm settle (squeeze) in init script
+
+ -- Markus Rosenstihl <Markus.Rosenstihl@physik.tu-darmstadt.de>  Sun, 28 Nov 2010 01:00:39 +0100
+
+damaris (0.11-0.2) experimental; urgency=low
+
+  * Spectrum MI4021 driver
+    - Can change now ext. ref clock frequency (needed for PulseBlaster 24 SP 17)
+    - Testing for timeout now checks the proper timeout variable
+  * PTS driver
+    - We can now change the phase_step in the machine file. Needed to accomodate PTS 500.
+  * backends
+    - Added berta backend (Using PB 24 SP 17; PTS 500)
+
+ -- Markus Rosenstihl <Markus.Rosenstihl@physik.tu-darmstadt.de>  Fri, 08 Jan 2010 14:27:16 +0100
+
+damaris (0.11-0.1) experimental; urgency=low
+
+  * pulseblaster module
+    - New udev support for 2.6.26 - 2.6.30, breaking prior support
+  * backends
+    - Make DAC20 more generic
+    - DAC20: Improve init- and exit-sequences
+    - Add FC2 backend (with two DACs)
+    - Some little buildsystem updates
+  * Kernel modules for version 2.6.26-2
+
+ -- Christian Tacke <Christian.Tacke@physik.tu-darmstadt.de>  Fri, 08 Jan 2010 14:27:16 +0100
+
+damaris (0.11-0) experimental; urgency=low
+
+  * pulseblaster module renewed: sysfs support, multiple pci devices, device probing
+  * udev support
+  * periodically call schedule instruction when writing to pulseblaster board
+  * non-pausing io instructions
+  * debian testing: xen-686 kernels omitted: some pci_* functions are not defined
+  * reasonable errno values returned from kernel module
+  * review of synchronization board code
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Wed,  26 Jun 2008 15:30:00 +0100
+
+damaris (0.10-4) experimental; urgency=low
+
+  * Kernel modules compiled and tested for version 2.6.18-6
+
+ -- Achim Gaedke <achim@eis.fkp.physik.tu-darmstadt.de>  Fri,  1 Feb 2008 17:24:38 +0100
+
+damaris (0.10-3) experimental; urgency=low
+
+  * PulseBlaster Programs are loaded in chunks, prevents system freeze for seconds
+  
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Thu, 18 Oct 2007 18:07:01 +0200
+
+damaris (0.10-2) experimental; urgency=low
+
+  * damaris-modules package contains various modules for testing and stable
+  * damaris-modules package has exact dependencies for supported kernel versions
+  * pulseblaster module does not reset device (because reset sequence is device dependent)
+  * damaris-backends hardware init script does not fail when modules are not available
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Wed, 17 Oct 2007 14:23:25 +0200
+
+damaris (0.10-1) experimental; urgency=low
+
+  [ Achim Gaedke ]
+  * check maximum number of instructions in backend and report proper
+    error
+
+  [ Christian Tacke ]
+  * Bump main version to 0.10
+  * Build-Depend on linux-headers-2.6-all | linux-headers-2.6.18-5-all
+    to really get headers for all subarchs
+  * No need to Build-Depend on g++,make,dpkg-dev as build-essential
+    depends on them
+
+ -- Christian Tacke <Christian.Tacke@physik.tu-darmstadt.de>  Thu,  4 Oct 2007 17:51:42 +0200
+
+damaris (0.9-0.5.2) experimental; urgency=low
+
+  * python-gui: separate package in frontends/greendamaris
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Thu, 06 Sep 2007 11:35:09 +0200
+
+damaris (0.9-0.5.1) experimental; urgency=low
+
+  * Split kernel modules into new damaris-modules package,
+    in preparation for per kernelversion packages
+  * Fix depedencies of damaris-backends
+  * Add Mobile_wo_sync_backend
+
+ -- Christian Tacke <Christian.Tacke@physik.tu-darmstadt.de>  Fri, 31 Aug 2007 11:15:38 +0200
+
+damaris (0.9-0.5) experimental; urgency=low
+
+  * python-gui: directory creation for dump files
+  * python-gui: release of backend subprocess
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Fri, 17 Aug 2007 11:46:08 +0200
+
+damaris (0.9-0.4) experimental; urgency=low
+
+  * python-gui: DAMARIS version information
+  * python-gui: correct matplotlib choice and recognition
+  * python-gui: counter for results produced by backend
+  * python-gui: clean up of internal counters and start/stop mechanisms
+  * drivres: pulseblaster-module directory removed with cleanup
+  * python-gui: disable hdf file generation by empty data pool filename
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Sun,  6 May 2007 19:40:08 +0200
+
+damaris (0.9-0.3) experimental; urgency=high
+
+  * checked all lock issues for threads
+  * basic debugging features --debug flag
+  * removed gtk.gdk.flush() command
+  * matplotlib backend can be chosen via -d option (recommending GTKCairo)
+  * be more careful with stop button: delayed change to insensitvity
+  * changed delay parameters to slow down scripts while observing the results
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Wed,  2 May 2007 12:46:10 +0200
+
+damaris (0.9-0.2) experimental; urgency=high
+
+  * python-gui: full cleanup in greendamaris
+  * backends: postrm removes nmr group while purging
+  * python-gui: classes of experiments and data modules are directly available (eg damaris.data.Accumulation)
+  * python-gui: automatic import of experiment classes to experiment script and data classes to result script
+  * python-gui: periodic dumping in extra thread without stopping measurement
+  * core: taking care of realloc return value
+  * python-gui renewed glade file, added missing alignment information
+  * backends: optimization for backend -O2 (makefile changes)
+  * backends: printf issue for size_t solved
+  * backends: striped .exe suffix from executables (linux not windows!)
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Tue, 24 Apr 2007 15:58:40 +0200
+
+damaris (0.9-0.1) experimental; urgency=medium
+
+  * added i386 and amd64 targets and kernel modules
+  * fixed class prefixes in damaris modules
+  * adapted init script to new spectrum modules
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Thu,  19 Apr 2007 14:00:00 +0100
+
+damaris (0.9-0.0) experimental; urgency=medium
+
+  * started debianization
+
+ -- Achim Gaedke <Achim.Gaedke@physik.tu-darmstadt.de>  Fri,  13 Apr 2007 14:12:12 +0100

debian/compat

@@ -0,0 +1 @@
+9

debian/control

@@ -0,0 +1,30 @@
+Source: damaris
+Section: science
+Priority: optional
+Standards-Version: 3.9.6
+Maintainer: Markus Rosenstihl <Markus.Rosenstihl@physik.tu-darmstadt.de>
+Uploaders: Markus Rosenstihl <Markus.Rosenstihl@physik.tu-darmstadt.de>
+Build-Depends: debhelper,
+	libxerces-c3-dev|libxerces-c-dev,
+	libexpat-dev|libexpat1-dev,
+	unzip,
+        libglib2.0-dev,
+	linux-headers|linux-headers-amd64,
+	cmake,
+
+Package: damaris-backends
+Architecture: i386 amd64
+Depends: ${shlibs:Depends}, bash (>=4.2), modutils|module-init-tools, coreutils (>=8.13), libxerces-c3.1|libxerces-c-dev, udev, lsof, libglib2.0-0
+Recommends: python-damaris|damaris-frontend, damaris-modules
+Description: DAMARIS backends package
+ This is the DAMARIS backends package. It contains machine definitions (the backends) for running DAMARIS experiments.
+
+Package: damaris-modules
+Architecture: i386 amd64
+Recommends: damaris-backends
+Depends: ${linux-image:Depends}
+Replaces: damaris-backends (<= 0.13-0.5)
+Description: Kernel modules for DAMARIS hardware
+ This are kernel modules for DAMARIS compatible hardware. Currently there are two binary drivers:
+ one for SpinCore PulseBlaster and Spectrum MI40xx ADC cards.
+

debian/damaris-backends.debhelper.log

@@ -0,0 +1,51 @@
+override_dh_auto_configure dh_auto_configure
+dh_auto_configure
+dh_auto_build
+dh_auto_test
+dh_prep
+dh_installdirs
+dh_auto_install
+override_dh_install dh_install
+override_dh_install dh_installmodules
+dh_install
+dh_installdocs
+dh_installchangelogs
+dh_installexamples
+dh_installman
+dh_installcatalogs
+dh_installcron
+dh_installdebconf
+dh_installemacsen
+dh_installifupdown
+dh_installinfo
+dh_installinit
+dh_installmenu
+dh_installmime
+dh_installmodules
+dh_installlogcheck
+dh_installlogrotate
+dh_installpam
+dh_installppp
+dh_installudev
+dh_installwm
+dh_installgsettings
+dh_bugfiles
+dh_ucf
+dh_lintian
+dh_gconf
+dh_icons
+dh_perl
+dh_usrlocal
+dh_link
+dh_installxfonts
+dh_compress
+dh_fixperms
+dh_strip
+dh_makeshlibs
+dh_shlibdeps
+dh_installdeb
+dh_gencontrol
+dh_md5sums
+dh_builddeb
+dh_builddeb
+dh_builddeb

debian/damaris-backends.install

@@ -0,0 +1,4 @@
+debian/tmp/usr/lib/damaris/backends/*
+debian/tmp/usr/share/doc/damaris-backends/backend.conf
+debian/tmp/etc/xdg/damaris/backend.conf
+

debian/damaris-backends.postinst

@@ -0,0 +1,27 @@
+#! /bin/sh
+
+if grep nmr /etc/group >/dev/null; then
+     echo "group nmr already exists" ;
+else
+     echo "creating group nmr" ;
+     groupadd nmr || echo "failed!"
+fi
+
+find /usr/lib/damaris/backends -type f \
+\! -name dummycore \
+-exec chgrp nmr {} \; \
+-exec chmod u+s,o= {} \;
+
+#DEBHELPER#
+
+if [ "$1" = "configure" -a -n "$2" ]; then
+   comparableversion=`echo "$2"|sed 's/[\.-]/ /g'|xargs printf "%03d%03d%03d"`
+   if [ "000011000" -gt $comparableversion ]; then
+      # transition to version with udev
+      if [ \! -e /etc/udev/rules.d/z60_damaris-backends.rules ]; then
+        # check whether the link/script was done when updating from 0.11 to newer version
+        ln -s ../damaris-backends.rules /etc/udev/rules.d/z60_damaris-backends.rules
+      fi
+   fi
+fi
+

debian/damaris-backends.postrm

@@ -0,0 +1,13 @@
+#! /bin/sh
+
+if test x$1 = xpurge; then
+  if grep nmr /etc/group >/dev/null; then
+       echo "deleting group nmr" ;
+       # be sure this does not stop the process
+       groupdel nmr || true
+  else
+       echo "group nmr already removed" ;
+  fi
+fi
+
+#DEBHELPER#

debian/damaris-backends.substvars

@@ -0,0 +1,2 @@
+shlibs:Depends=libc6 (>= 2.14), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libglib2.0-0 (>= 2.12.0), libstdc++6 (>= 4.9), libxerces-c3.1
+misc:Depends=

debian/damaris-modules.debhelper.log

@@ -0,0 +1,51 @@
+override_dh_auto_configure dh_auto_configure
+dh_auto_configure
+dh_auto_build
+dh_auto_test
+dh_prep
+dh_installdirs
+dh_auto_install
+override_dh_install dh_install
+override_dh_install dh_installmodules
+dh_install
+dh_installdocs
+dh_installchangelogs
+dh_installexamples
+dh_installman
+dh_installcatalogs
+dh_installcron
+dh_installdebconf
+dh_installemacsen
+dh_installifupdown
+dh_installinfo
+dh_installinit
+dh_installmenu
+dh_installmime
+dh_installmodules
+dh_installlogcheck
+dh_installlogrotate
+dh_installpam
+dh_installppp
+dh_installudev
+dh_installwm
+dh_installgsettings
+dh_bugfiles
+dh_ucf
+dh_lintian
+dh_gconf
+dh_icons
+dh_perl
+dh_usrlocal
+dh_link
+dh_installxfonts
+dh_compress
+dh_fixperms
+dh_strip
+dh_makeshlibs
+dh_shlibdeps
+dh_installdeb
+dh_gencontrol
+dh_md5sums
+dh_builddeb
+dh_builddeb
+dh_builddeb

debian/damaris-modules.init

@@ -0,0 +1,158 @@
+#!/bin/sh
+### BEGIN INIT INFO
+# Provides:          damaris-backends
+# Required-Start:    $syslog
+# Required-Stop:     $syslog
+# Default-Start:     2 3 4 5
+# Default-Stop:      0 1 6
+# Short-Description: Startup script to load nmr hardware drivers for use with damaris backends
+# Description:       loads available nmr hardware drivers and grants rights to nmr group
+#                    these drivers will be typically used by damaris backends and accompanying programs
+### END INIT INFO
+
+# Script Author:        Achim Gaedke <achim.gaedke@physik.tu-darmstadt.de>
+# Created:              February 28th,  2005, adapted to LSB June 2008
+
+PATH=/sbin:/usr/sbin:/bin:/usr/bin
+. /lib/lsb/init-functions
+
+RETVAL=0
+# failure value for nonexisting hardware
+HARDWARE_FAIL_RETVAL=0
+
+NMR_MODULE_DIR=/lib/modules/`uname -r`/kernel/damaris
+NMR_GROUP="nmr"
+
+# tools
+RMMOD=/sbin/rmmod
+MODPROBE=/sbin/modprobe
+KERNELCONF=/boot/config-`uname -r`
+
+# spectrum related stuff
+SPECTRUM_NAME=spc
+CONFIG_SMP="`grep 'CONFIG_SMP *=' $KERNELCONF | sed 's/.*=//'`"
+if test "x$CONFIG_SMP" = "xy"; then
+  SPECTRUM_SMP_EXT="_smp";
+else
+  SPECTRUM_SMP_EXT="";
+fi
+SPECTRUM_DEV=/dev/${SPECTRUM_NAME}0
+SPECTRUM_MOD_FILE=$NMR_MODULE_DIR/${SPECTRUM_NAME}${SPECTRUM_SMP_EXT}.ko
+
+# pulseblaster related stuff
+PULSEBLASTER_NAME=pulseblaster
+PULSEBLASTER_MOD_FILE=$NMR_MODULE_DIR/$PULSEBLASTER_NAME.ko
+PULSEBLASTER_DEV=/dev/$PULSEBLASTER_NAME
+
+start() {
+
+        SPECTRUM_RETVAL=0
+        # find out whether spectrum module is running
+	if egrep "^spc${SPECTRUM_SMP_EXT} " /proc/modules >/dev/null ; then
+	     echo "spectrum module already loaded"
+	else
+	     # ok, load it
+             if test -f $SPECTRUM_MOD_FILE; then
+		if ! $MODPROBE ${SPECTRUM_NAME}${SPECTRUM_SMP_EXT} >/dev/null 2>&1; then
+		        echo "spectrum module failed to load"
+			SPECTRUM_RETVAL=1
+		fi
+	     else
+		echo "spectrum module not found"
+		SPECTRUM_RETVAL=1
+	     fi
+        fi
+
+        PULSEBLASTER_RETVAL=0
+        # find out whether pulseblaster module is running
+        if egrep "^pulseblaster " /proc/modules >/dev/null ; then
+	     echo "pulseblaster module already loaded"
+	else
+	     # ok, load it
+             if test -f $PULSEBLASTER_MOD_FILE; then
+		if ! $MODPROBE $PULSEBLASTER_NAME >/dev/null 2>&1; then
+			echo "pulseblaster module failed to load"
+			PULSEBLASTER_RETVAL=1
+		fi
+	     else
+		echo "pulseblaster module not found"
+		PULSEBLASTER_RETVAL=1
+	     fi
+        fi
+
+	# have to wait for a short time, let udev do the work
+	if [ -x /sbin/udevsettle ]; then
+	/sbin/udevsettle
+	fi
+	if [ -x /sbin/udevadm ]; then
+	/sbin/udevadm settle
+	fi
+	if ! test $PULSEBLASTER_RETVAL -ne 0 -o -c ${PULSEBLASTER_DEV}0 ; then
+		echo "no pulseblaster board is found, only the debug device at ${PULSEBLASTER_DEV}_debug is available"
+	fi
+
+	# with udev, we should have links and also the rights set correctly
+        if test  $PULSEBLASTER_RETVAL -ne 0  -o $SPECTRUM_RETVAL -ne 0; then
+             RETVAL=$HARDWARE_FAIL_RETVAL
+        fi
+
+}
+
+stop() {
+	if egrep "^spc$SPECTRUM_SMP_EXT " /proc/modules >/dev/null ; then
+	  # test wheter spectrum driver is still used
+	  # !!!! the usage counter of the spc kernel module is not maintained!!!!
+	  if test "`lsof $SPECTRUM_DEV`x" = "x"; then
+		$MODPROBE -r ${SPECTRUM_NAME}${SPECTRUM_SMP_EXT} || RETVAL=1
+	  else
+	        echo "spectrum driver still in use (use lsof)"
+                RETVAL=1
+	  fi
+	fi
+	if egrep "^${PULSEBLASTER_NAME} " /proc/modules > /dev/null ; then
+	  # test wheter it is still used
+	  $MODPROBE -r ${PULSEBLASTER_NAME} || RETVAL=1
+	fi
+	# have to wait for a short time, let udev do the work
+	if [ -x /sbin/udevsettle ]; then
+	/sbin/udevsettle
+	fi
+	if [ -x /sbin/udevadm ]; then
+	/sbin/udevadm settle
+	fi
+}
+
+status () {
+	if egrep "^${SPECTRUM_NAME}$SPECTRUM_SMP_EXT " /proc/modules > /dev/null ; then
+	   echo spectrum module loaded
+	else
+	   echo spectrum module not loaded
+           RETVAL=3
+	fi
+	if egrep "^${PULSEBLASTER_NAME} " /proc/modules > /dev/null ; then
+	   echo pulseblaster module loaded
+	else
+	   echo pulseblaster module not loaded
+           RETVAL=3
+	fi
+}
+
+case "$1" in
+        start)
+                start
+                ;;
+        stop)
+                stop
+                ;;
+        restart)
+                stop
+                start
+                ;;
+        status)
+                status
+                ;;
+        *)
+                printf "Usage: %s {start|stop|restart|status}\n" "$0"
+                RETVAL=1
+esac
+exit $RETVAL

debian/damaris-modules.install

@@ -0,0 +1,2 @@
+debian/tmp/lib/modules/*
+

debian/damaris-modules.postinst

@@ -0,0 +1,8 @@
+#! /bin/sh
+if grep -q nmr /etc/group; then
+     echo "group nmr already exists" ;
+else
+     echo "creating group nmr" ;
+     groupadd nmr || echo "failed!"
+fi
+

debian/damaris-modules.postinst.debhelper

@@ -0,0 +1,31 @@
+# Automatically added by dh_installmodules
+if [ "$1" = "configure" ]; then
+	if [ -e /boot/System.map-4.8.0-0.bpo.2-amd64 ]; then
+		depmod -a -F /boot/System.map-4.8.0-0.bpo.2-amd64 4.8.0-0.bpo.2-amd64 || true
+	fi
+fi
+# End automatically added section
+# Automatically added by dh_installinit
+if [ -x "/etc/init.d/damaris-modules" ]; then
+	update-rc.d damaris-modules defaults >/dev/null
+	invoke-rc.d damaris-modules start || exit $?
+fi
+# End automatically added section
+# Automatically added by dh_installmodules
+if [ "$1" = "configure" ]; then
+	if [ -e /boot/System.map-4.8.0-0.bpo.2-amd64 ]; then
+		depmod -a -F /boot/System.map-4.8.0-0.bpo.2-amd64 4.8.0-0.bpo.2-amd64 || true
+	fi
+fi
+# End automatically added section
+# Automatically added by dh_installudev
+if [ "$1" = configure ]; then
+	if [ -e "/etc/udev/rules.d/z60_damaris-modules.rules" ]; then
+		echo "Preserving user changes to /etc/udev/rules.d/60-damaris-modules.rules ..."
+		if [ -e "/etc/udev/rules.d/60-damaris-modules.rules" ]; then
+			mv -f "/etc/udev/rules.d/60-damaris-modules.rules" "/etc/udev/rules.d/60-damaris-modules.rules.dpkg-new"
+		fi
+		mv -f "/etc/udev/rules.d/z60_damaris-modules.rules" "/etc/udev/rules.d/60-damaris-modules.rules"
+	fi
+fi
+# End automatically added section

debian/damaris-modules.postrm.debhelper

@@ -0,0 +1,22 @@
+# Automatically added by dh_installmodules
+if [ -e /boot/System.map-4.8.0-0.bpo.2-amd64 ]; then
+	depmod -a -F /boot/System.map-4.8.0-0.bpo.2-amd64 4.8.0-0.bpo.2-amd64 || true
+fi
+# End automatically added section
+# Automatically added by dh_installinit
+if [ "$1" = "purge" ] ; then
+	update-rc.d damaris-modules remove >/dev/null
+fi
+
+
+# In case this system is running systemd, we make systemd reload the unit files
+# to pick up changes.
+if [ -d /run/systemd/system ] ; then
+	systemctl --system daemon-reload >/dev/null || true
+fi
+# End automatically added section
+# Automatically added by dh_installmodules
+if [ -e /boot/System.map-4.8.0-0.bpo.2-amd64 ]; then
+	depmod -a -F /boot/System.map-4.8.0-0.bpo.2-amd64 4.8.0-0.bpo.2-amd64 || true
+fi
+# End automatically added section

debian/damaris-modules.preinst.debhelper

@@ -0,0 +1,11 @@
+# Automatically added by dh_installudev
+if [ "$1" = install ] || [ "$1" = upgrade ]; then
+	if [ -e "/etc/udev/rules.d/z60_damaris-modules.rules" ]; then
+		if [ "`md5sum \"/etc/udev/rules.d/z60_damaris-modules.rules\" | sed -e \"s/ .*//\"`" = \
+		     "`dpkg-query -W -f='${Conffiles}' damaris-modules | sed -n -e \"\\\\' /etc/udev/rules.d/z60_damaris-modules.rules '{s/ obsolete$//;s/.* //p}\"`" ]
+		then
+			rm -f "/etc/udev/rules.d/z60_damaris-modules.rules"
+		fi
+	fi
+fi
+# End automatically added section

debian/damaris-modules.prerm.debhelper

@@ -0,0 +1,5 @@
+# Automatically added by dh_installinit
+if [ -x "/etc/init.d/damaris-modules" ]; then
+	invoke-rc.d damaris-modules stop || exit $?
+fi
+# End automatically added section

debian/damaris-modules.substvars

@@ -0,0 +1 @@
+misc:Depends=

debian/damaris-modules.udev

@@ -0,0 +1,21 @@
+# Achim Gaedke, Jun 2008
+# udev rules for driver access
+
+# create nmr group first using the command
+# addgroup nmr
+
+# add users authorized to use nmr devices to that group
+# usermod -a -G nmr bloch
+
+# pulseblaster
+SUBSYSTEM=="pulseblaster", GROUP="nmr"
+# spectrum driver
+SUBSYSTEM=="misc", KERNEL=="spc?*", GROUP="nmr"
+
+# mainly for backward compatibility
+SUBSYSTEM=="pulseblaster", KERNEL=="pulseblaster0", SYMLINK+="pulseblaster"
+
+# if you use parport for stepper motor control
+# and remove /usr/lib/cups/backend/parallel to disable cups access
+# KERNEL=="parport0", GROUP="nmr"
+

debian/files

@@ -0,0 +1,2 @@
+damaris-backends_0.15_amd64.deb science optional
+damaris-modules_0.15_amd64.deb science optional

debian/rules

@@ -0,0 +1,52 @@
+#!/usr/bin/make -f
+
+# Achim Gaedke
+# May 2007
+
+# Uncomment this to turn on verbose mode. 
+DH_VERBOSE=1
+export DH_OPTIONS=-v
+
+DPKG_EXPORT_BUILDFLAGS = 1
+include /usr/share/dpkg/default.mk
+
+BACKENDSBASE=$(shell pwd)/debian/damaris-backends
+BACKENDSMACHINES = \
+	dummycore \
+	deuteron_backend \
+	magnexgrad_backend \
+	magnexgrad_backend_dds \
+	PFGcore \
+	fc2_backend \
+	bg_backend \
+	Mobilecore \
+	berta \
+        birgit \
+	Mobile_wo_sync_backend \
+        general
+
+tmp_kernel_makefiles = $(wildcard /lib/modules/*/build/Makefile)
+#if we are no debian testing, exclude xen-686 (problems with pci_... support in pulseblaster and spc driver)
+# with xen-686, waiting for problems to be fixed
+#KERNELVERSIONS = $(filter-out %-xen-686, $(tmp_kernel_makefiles:/lib/modules/%/build/Makefile=%))
+# for stable everything is still fine
+KERNELVERSIONS = $(tmp_kernel_makefiles:/lib/modules/%/build/Makefile=%)
+DEB_BUILD_ARCH=$(strip $(shell dpkg-architecture -qDEB_BUILD_ARCH))
+
+
+#build: build-stamp
+
+%:
+	dh $@ --buildsystem=cmake --parallel --builddirectory=build
+
+clean:
+	rm -rf build
+	dh_clean
+
+override_dh_auto_configure:
+	dh_auto_configure -- -DCMAKE_INSTALL_SYSCONFDIR=/etc
+
+override_dh_install:
+	dh_install
+	dh_installmodules
+

debian/source/format

@@ -0,0 +1 @@
+3.0 (native)

drivers/Spectrum-MI40xxSeries/CMakeLists.txt

@@ -15,7 +15,12 @@ add_custom_command(OUTPUT ${SPC_HEADERS}
         COMMENT "Unpacking SPC headers"
         VERBATIM)
 
-# Creating spc kernel module if the folder
+# Kernelmodule is build from NDA source code.
+# just go to the current directory and tar xfz drvsrc_all_V*.tgz
+# this will usually create a "linux" folder
+# the actual kernel source file is in the src_all/micx_drv subfolder
+# If the "linux" folder exists the driver will be build
+
 set(SPC_SRC ${CMAKE_CURRENT_SOURCE_DIR}/linux/src_all/micx_drv)
 set(DRIVER_FILE ${SPC_SRC}/spc_smp.ko )
 set(KERNEL_DIR "/lib/modules/${CMAKE_SYSTEM_VERSION}/build" )
@@ -33,6 +38,8 @@ add_custom_command(OUTPUT ${DRIVER_FILE}
                    VERBATIM)
 if(EXISTS ${CMAKE_SOURCE_DIR}/drivers/Spectrum-MI40xxSeries/linux)
     add_custom_target (micx_drv ALL DEPENDS ${DRIVER_FILE} )
+    install(FILES ${DRIVER_FILE} DESTINATION /lib/modules/${CMAKE_SYSTEM_VERSION}/kernel/damaris)
+
 else()
     message(Spectrum MI40xx dirver not found, unpack and configure it)
 endif()

drivers/SpinCore-PulseBlaster/CMakeLists.txt

@@ -13,8 +13,8 @@ add_custom_command(OUTPUT ${DRIVER_FILE}
                    COMMENT "Building pulseblaster.ko"
                    WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
                    VERBATIM)
-
 add_custom_target(pulseblaster_drv ALL DEPENDS ${DRIVER_FILE} )
+install(FILES ${DRIVER_FILE} DESTINATION /lib/modules/${CMAKE_SYSTEM_VERSION}/kernel/damaris)
 
 #include_directories(..)
 add_library(SpinCore-PulseBlaster SpinCore-PulseBlaster.cpp)

machines/CMakeLists.txt

@@ -21,15 +21,17 @@ set(PBDDS SpinCore-PulseBlasterDDSIII SpinCore-PulseBlaster PulseBlasterProgram)
 
 add_executable(dummycore dummycore.cpp hardware.cpp)
 target_link_libraries(dummycore pthread ${XERCES_LIBRARIES} core dummy tempcont Eurotherm-2000Series)
+install(TARGETS dummycore DESTINATION lib/damaris/backends)
 
 add_executable(berta berta.cpp hardware.cpp)
 target_link_libraries(berta pthread ${XERCES_LIBRARIES} core Spectrum_MI40xxSeries ${PB24} PTS  )
+install(TARGETS berta DESTINATION lib/damaris/backends)
 
 add_executable(birgit birgit.cpp hardware.cpp)
 target_link_libraries(birgit pthread ${XERCES_LIBRARIES} core Spectrum_MI40xxSeries ${PB24} PTS  )
+install(TARGETS birgit DESTINATION lib/damaris/backends)
 
 add_executable(bg_backend bg_backend.cpp hardware.cpp)
-
 target_link_libraries(bg_backend pthread ${XERCES_LIBRARIES} core Spectrum_MI40xxSeries ${PB24} PTS  )
 
 add_executable(Mobilecore Mobilecore.cpp hardware.cpp)
@@ -38,7 +40,6 @@ target_link_libraries(Mobilecore pthread ${XERCES_LIBRARIES} core Spectrum_MI40x
 add_executable(Mobilecore_wo_sync_backend Mobile_wo_sync_backend.cpp hardware.cpp)
 target_link_libraries(Mobilecore_wo_sync_backend pthread ${XERCES_LIBRARIES} core Spectrum_MI40xxSeries ${PB24} PTS  )
 
-
 add_executable(deuteron_backend deuteron_backend.cpp hardware.cpp)
 target_link_libraries(deuteron_backend pthread ${XERCES_LIBRARIES} core Spectrum_MI40xxSeries ${PB24} ${PBDDS} PTS  )
 
@@ -71,3 +72,20 @@ target_link_libraries( magnexgrad_dds_backend pthread ${XERCES_LIBRARIES} core S
 
 add_executable(pulseblaster_only pulseblaster_only.cpp hardware.cpp)
 target_link_libraries(pulseblaster_only pthread ${XERCES_LIBRARIES} core ${PB24} PTS dummy DAC20 tempcont Eurotherm-2000Series )
+install(TARGETS dummycore
+        berta
+        birgit
+        bg_backend
+        Mobilecore
+        Mobilecore_wo_sync_backend
+        deuteron_backend
+        fc1neu_backend
+        PFGcore
+        fc2_backend
+        fc2_AD5791_backend
+        general
+        magnexgrad_backend
+        magnexgrad_dds_backend
+        pulseblaster_only
+        DESTINATION lib/damaris/backends)
+

machines/Makefile

@@ -28,6 +28,7 @@ MACHINES = \
 	Mobile_wo_sync_backend$(EXEEXT) \
 	berta \
 	general \
+	birgit \
 	pulseblaster_only
 
 DRV_SPC_MI40xx    = ../drivers/Spectrum-MI40xxSeries/Spectrum-MI40xxSeries.a

machines/general.cpp

@@ -62,8 +62,8 @@ public:
                 {
                     if (error->code != 4)
                     {
-                        fprintf(stdout, "found!\n");
+                        fprintf(stdout, "%s","found!\n");
-                        g_log(G_LOG_DOMAIN, G_LOG_LEVEL_WARNING, error->message);
+                        g_log(G_LOG_DOMAIN, G_LOG_LEVEL_WARNING, "%s", error->message);
                     }
                     else
                         printf("not found!\n");
@@ -81,7 +81,7 @@ public:
             if (error->code != 4)
             {
                 fprintf(stdout, "found!\n");
-                g_log(G_LOG_DOMAIN, G_LOG_LEVEL_WARNING, error->message);
+                g_log(G_LOG_DOMAIN, G_LOG_LEVEL_WARNING,"%s", error->message);
             }
             else
                 printf("not found!\n");

tools/CMakeLists.txt

@@ -0,0 +1,7 @@
+cmake_minimum_required(VERSION 3.0)
+include(GNUInstallDirs)
+
+install(FILES backend.conf
+        DESTINATION ${CMAKE_INSTALL_FULL_DOCDIR})
+install(FILES backend.conf
+        DESTINATION ${CMAKE_INSTALL_FULL_SYSCONFDIR}/xdg/damaris)