dev (#275)
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Build AppImage / Explore-Gitea-Actions (push) Successful in 1m38s
closes issues #267 #274, #255, #256 Co-authored-by: Dominik Demuth <dominik.demuth@physik.tu-darmstadt.de> Reviewed-on: #275
This commit is contained in:
parent
6ecc789cd5
commit
8f92d8d822
@ -1,6 +1,6 @@
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# -*- coding: utf-8 -*-
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# Form implementation generated from reading ui file 'src/resources/_ui/basewindow.ui'
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# Form implementation generated from reading ui file './nmreval/src/resources/_ui/basewindow.ui'
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#
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# Created by: PyQt5 UI code generator 5.15.10
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#
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@ -87,6 +87,8 @@ class Ui_BaseWindow(object):
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self.menuSave.setObjectName("menuSave")
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self.menuData = QtWidgets.QMenu(self.menubar)
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self.menuData.setObjectName("menuData")
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self.menuCut_to_visible_range = QtWidgets.QMenu(self.menuData)
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self.menuCut_to_visible_range.setObjectName("menuCut_to_visible_range")
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self.menuHelp = QtWidgets.QMenu(self.menubar)
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self.menuHelp.setObjectName("menuHelp")
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self.menuExtra = QtWidgets.QMenu(self.menubar)
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@ -304,8 +306,6 @@ class Ui_BaseWindow(object):
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self.actionDerivation.setObjectName("actionDerivation")
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self.actionIntegration = QtWidgets.QAction(BaseWindow)
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self.actionIntegration.setObjectName("actionIntegration")
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self.action_cut = QtWidgets.QAction(BaseWindow)
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self.action_cut.setObjectName("action_cut")
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self.actionMove_between_plots = QtWidgets.QAction(BaseWindow)
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self.actionMove_between_plots.setObjectName("actionMove_between_plots")
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self.actionBaseline = QtWidgets.QAction(BaseWindow)
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@ -368,6 +368,10 @@ class Ui_BaseWindow(object):
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self.actionExclude_region = QtWidgets.QAction(BaseWindow)
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self.actionExclude_region.setCheckable(True)
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self.actionExclude_region.setObjectName("actionExclude_region")
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self.action_cut_xaxis = QtWidgets.QAction(BaseWindow)
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self.action_cut_xaxis.setObjectName("action_cut_xaxis")
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self.action_cut_yaxis = QtWidgets.QAction(BaseWindow)
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self.action_cut_yaxis.setObjectName("action_cut_yaxis")
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self.menuSave.addAction(self.actionSave)
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self.menuSave.addAction(self.actionExportGraphic)
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self.menuSave.addAction(self.action_save_fit_parameter)
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@ -380,6 +384,9 @@ class Ui_BaseWindow(object):
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self.menuFile.addSeparator()
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self.menuFile.addAction(self.action_close)
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self.menuFile.addSeparator()
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self.menuCut_to_visible_range.addSeparator()
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self.menuCut_to_visible_range.addAction(self.action_cut_xaxis)
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self.menuCut_to_visible_range.addAction(self.action_cut_yaxis)
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self.menuData.addAction(self.action_new_set)
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self.menuData.addAction(self.action_delete_sets)
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self.menuData.addAction(self.actionMove_between_plots)
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@ -389,7 +396,7 @@ class Ui_BaseWindow(object):
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self.menuData.addAction(self.action_sort_pts)
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self.menuData.addAction(self.actionSkip_points)
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self.menuData.addSeparator()
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self.menuData.addAction(self.action_cut)
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self.menuData.addAction(self.menuCut_to_visible_range.menuAction())
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self.menuData.addSeparator()
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self.menuData.addAction(self.actionChange_datatypes)
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self.menuHelp.addAction(self.actionShow_error_log)
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@ -515,6 +522,7 @@ class Ui_BaseWindow(object):
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self.menuFile.setTitle(_translate("BaseWindow", "&File"))
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self.menuSave.setTitle(_translate("BaseWindow", "&Save..."))
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self.menuData.setTitle(_translate("BaseWindow", "&Data"))
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self.menuCut_to_visible_range.setTitle(_translate("BaseWindow", "Cut to visible range"))
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self.menuHelp.setTitle(_translate("BaseWindow", "&Help"))
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self.menuExtra.setTitle(_translate("BaseWindow", "Math"))
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self.menuNormalize.setTitle(_translate("BaseWindow", "&Normalize"))
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@ -608,7 +616,6 @@ class Ui_BaseWindow(object):
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self.actionIntegrate.setText(_translate("BaseWindow", "Integrate"))
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self.actionDerivation.setText(_translate("BaseWindow", "Differentiation..."))
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self.actionIntegration.setText(_translate("BaseWindow", "Integration..."))
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self.action_cut.setText(_translate("BaseWindow", "Cut to visible range"))
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self.actionMove_between_plots.setText(_translate("BaseWindow", "Move sets..."))
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self.actionBaseline.setText(_translate("BaseWindow", "Baseline..."))
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self.actionCalculateT1.setText(_translate("BaseWindow", "Calculate relaxation..."))
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@ -636,6 +643,10 @@ class Ui_BaseWindow(object):
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self.actionBinning.setText(_translate("BaseWindow", "Binning..."))
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self.actionTNMH.setText(_translate("BaseWindow", "TNMH..."))
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self.actionExclude_region.setText(_translate("BaseWindow", "Exclude region"))
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self.action_cut_xaxis.setText(_translate("BaseWindow", "x axis"))
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self.action_cut_xaxis.setToolTip(_translate("BaseWindow", "Remove data points outside visible x range."))
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self.action_cut_yaxis.setText(_translate("BaseWindow", "y axis"))
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self.action_cut_yaxis.setToolTip(_translate("BaseWindow", "Remove data points outside visible y range. Uses real part of points."))
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from ..data.datawidget.datawidget import DataWidget
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from ..data.integral_widget import IntegralWidget
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from ..data.point_select import PointSelectWidget
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@ -1,8 +1,8 @@
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# -*- coding: utf-8 -*-
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# Form implementation generated from reading ui file 'src/resources/_ui/interpol_dialog.ui'
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# Form implementation generated from reading ui file './nmreval/src/resources/_ui/interpol_dialog.ui'
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#
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# Created by: PyQt5 UI code generator 5.15.9
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# Created by: PyQt5 UI code generator 5.15.10
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#
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# WARNING: Any manual changes made to this file will be lost when pyuic5 is
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# run again. Do not edit this file unless you know what you are doing.
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@ -55,7 +55,7 @@ class Ui_Dialog(object):
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self.gridLayout.addWidget(self.interp_comboBox, 4, 1, 1, 1)
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self.buttonBox = QtWidgets.QDialogButtonBox(Dialog)
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self.buttonBox.setOrientation(QtCore.Qt.Horizontal)
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self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok)
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self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Apply|QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok)
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self.buttonBox.setObjectName("buttonBox")
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self.gridLayout.addWidget(self.buttonBox, 12, 0, 1, 2)
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self.line = QtWidgets.QFrame(Dialog)
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@ -132,8 +132,6 @@ class Ui_Dialog(object):
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self.label_8.setBuddy(self.dest_combobox)
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self.retranslateUi(Dialog)
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self.buttonBox.accepted.connect(Dialog.accept) # type: ignore
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self.buttonBox.rejected.connect(Dialog.reject) # type: ignore
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QtCore.QMetaObject.connectSlotsByName(Dialog)
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Dialog.setTabOrder(self.listWidget, self.ylog_checkBox)
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Dialog.setTabOrder(self.ylog_checkBox, self.interp_comboBox)
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@ -300,10 +300,12 @@ class ExperimentContainer(QtCore.QObject):
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self._relations.pop(relation_type)
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def _update_actions(self):
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self.actions.update({'sort': self._data.sort,
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'cut': self._data.cut,
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'norm': self._data.normalize,
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'center': self.center})
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self.actions.update({
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'sort': self._data.sort,
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'cut': self._data.cut,
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'norm': self._data.normalize,
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'center': self.center,
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})
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@plot_update
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def update(self, opts: dict):
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@ -311,9 +313,11 @@ class ExperimentContainer(QtCore.QObject):
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def get_properties(self) -> dict:
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props = OrderedDict()
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props['General'] = OrderedDict([('Name', self.name),
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('Value', str(self.value)),
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('Group', str(self.group))])
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props['General'] = OrderedDict([
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('Name', self.name),
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('Value', str(self.value)),
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('Group', str(self.group)),
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])
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props['Symbol'] = OrderedDict()
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props['Line'] = OrderedDict()
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@ -480,10 +484,12 @@ class ExperimentContainer(QtCore.QObject):
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else:
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prefix = f'g[{i}].s[{j}].'
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namespace = {prefix + 'x': (self.x, 'x values'),
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prefix + 'y': [self.y, 'y values'],
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prefix + 'y_err': (self.y_err, 'y error values'),
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prefix + 'value': (self.value, str(self.value))}
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namespace = {
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prefix + 'x': (self.x, 'x values'),
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prefix + 'y': [self.y, 'y values'],
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prefix + 'y_err': (self.y_err, 'y error values'),
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prefix + 'value': (self.value, str(self.value)),
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}
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if len(self._fits) == 1:
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namespace.update({
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@ -385,6 +385,6 @@ class ValueModel(QtCore.QAbstractTableModel):
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@staticmethod
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def as_string(value) -> str:
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if isinstance(value, complex):
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return f'{value.real:.8g}{value.imag:+.8g}j'
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return f'{value.real:.13g}{value.imag:+.13g}j'
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else:
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return f'{value:.8g}'
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return f'{value:.13g}'
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@ -28,6 +28,12 @@ class QFCReader(QtWidgets.QDialog, Ui_FCEval_dialog):
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self.listWidget.installEventFilter(self)
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def __call__(self, path=None):
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if path is None:
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path = pathlib.Path().home()
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self.path = path
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self.listWidget.clear()
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def eventFilter(self, src: QtCore.QObject, evt: QtCore.QEvent) -> bool:
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# intercept key press in listwidget to allow deletion with Del
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if evt.type() == QtCore.QEvent.Type.KeyPress:
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@ -82,6 +88,7 @@ class QFCReader(QtWidgets.QDialog, Ui_FCEval_dialog):
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def accept(self):
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items = [self.listWidget.item(i).text() for i in range(self.listWidget.count())]
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print(items)
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if items:
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with busy_cursor():
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self.read(items)
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@ -116,6 +123,7 @@ class QFCReader(QtWidgets.QDialog, Ui_FCEval_dialog):
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ret_vals = []
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ret_vals.extend(fc_eval.get_parameter(path=self.label.text(), kind='temp', parameter=save_variables))
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print(ret_vals)
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grp = ''
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if not self.graph_checkbox.isChecked():
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@ -62,6 +62,8 @@ class NMRMainWindow(QtWidgets.QMainWindow, Ui_BaseWindow):
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self.fitresult_dialog = None
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self.eval = None
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self.editor = None
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self._interpol_dialog = None
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self.fc_reader = None
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self.logtext = QTextHandler(self)
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logger.addHandler(self.logtext)
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@ -233,7 +235,8 @@ class NMRMainWindow(QtWidgets.QMainWindow, Ui_BaseWindow):
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self.action_norm_first.triggered.connect(lambda: self.management.apply('norm', ('first',)))
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self.action_norm_last.triggered.connect(lambda: self.management.apply('norm', ('last',)))
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self.action_norm_area.triggered.connect(lambda: self.management.apply('norm', ('area',)))
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self.action_cut.triggered.connect(lambda: self.management.cut())
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self.action_cut_xaxis.triggered.connect(lambda: self.management.cut(True, False))
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self.action_cut_yaxis.triggered.connect(lambda: self.management.cut(False, True))
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self.actionConcatenate_sets.triggered.connect(lambda: self.management.cat())
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@ -264,14 +267,15 @@ class NMRMainWindow(QtWidgets.QMainWindow, Ui_BaseWindow):
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@QtCore.pyqtSlot(name='on_actionOpen_FC_triggered')
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def read_fc(self):
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reader = QFCReader(path=self.path, parent=self)
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reader.add_graphs(self.management.graphs.list())
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reader.data_read.connect(self.management.add_new_data)
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reader.exec()
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if self.fc_reader is None:
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self.fc_reader = QFCReader(path=self.path, parent=self)
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self.fc_reader.data_read.connect(self.management.add_new_data)
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else:
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self.fc_reader(path=self.path)
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self.fc_reader.add_graphs(self.management.graphs.list())
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self.fc_reader.exec()
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self.path = reader.path
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del reader
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self.path = self.fc_reader.path
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@QtCore.pyqtSlot(name='on_actionPrint_triggered')
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def print(self):
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@ -701,10 +705,13 @@ class NMRMainWindow(QtWidgets.QMainWindow, Ui_BaseWindow):
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return
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gnames = self.management.graphs.tree()
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dialog = InterpolDialog(parent=self)
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dialog.set_data(gnames, self.current_graph_widget.id)
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dialog.new_data.connect(self.management.interpolate_data)
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dialog.show()
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if self._interpol_dialog is None:
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self._interpol_dialog = InterpolDialog(parent=self)
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self._interpol_dialog.new_data.connect(self.management.interpolate_data)
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else:
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self._interpol_dialog()
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self._interpol_dialog.set_data(gnames, self.current_graph_widget.id)
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self._interpol_dialog.show()
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@QtCore.pyqtSlot(name='on_action_calc_triggered')
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def open_eval_dialog(self):
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@ -450,10 +450,17 @@ class UpperManagement(QtCore.QObject):
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self.undostack.push(single_undo)
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self.undostack.endMacro()
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def cut(self):
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def cut(self, x: bool = False, y: bool = False) -> None:
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if self.current_graph:
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xlim, _ = self.graphs[self.current_graph].ranges
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self.apply('cut', xlim)
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xlim, ylim = self.graphs[self.current_graph].ranges
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if x is False:
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xlim = (None, None)
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if y is False:
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ylim = (None, None)
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self.apply('cut', (*xlim, *ylim))
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@QtCore.pyqtSlot()
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def unmask(self):
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@ -16,6 +16,12 @@ class InterpolDialog(QtWidgets.QDialog, Ui_Dialog):
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self.step_lineEdit.setValidator(QtGui.QIntValidator())
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self._data = {}
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self._src_id = None
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self._dest_graph = ''
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def __call__(self):
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self.listWidget.clear()
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self._data = {}
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@QtCore.pyqtSlot(int, name='on_xaxis_comboBox_currentIndexChanged')
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def change_x_source(self, idx: int):
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@ -25,29 +31,41 @@ class InterpolDialog(QtWidgets.QDialog, Ui_Dialog):
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def set_data(self, data, current_gid):
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self.graph_combobox.blockSignals(True)
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self._data = {}
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dest_idx = 0
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for (gid, graph_name), sets in data.items():
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self.graph_combobox.addItem(graph_name, userData=gid)
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self.dest_combobox.addItem(graph_name, userData=gid)
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if self._dest_graph == gid:
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dest_idx = self.dest_combobox.currentIndex()
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if gid == current_gid:
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self.make_list(sets)
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self._data[gid] = sets
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self.graph_combobox.blockSignals(False)
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self.change_graph(0)
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self.change_graph(dest_idx)
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def make_list(self, current_sets):
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for sid, set_name in current_sets:
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item = QtWidgets.QListWidgetItem(set_name)
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item.setData(QtCore.Qt.UserRole, sid)
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item.setCheckState(QtCore.Qt.Checked)
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item.setData(QtCore.Qt.ItemDataRole.UserRole, sid)
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item.setCheckState(QtCore.Qt.CheckState.Checked)
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self.listWidget.addItem(item)
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@QtCore.pyqtSlot(int, name='on_graph_combobox_currentIndexChanged')
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def change_graph(self, idx: int):
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self.set_combobox.clear()
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gid = self.graph_combobox.itemData(idx, QtCore.Qt.UserRole)
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gid = self.graph_combobox.itemData(idx, QtCore.Qt.ItemDataRole.UserRole)
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set_idx = -1
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if gid is not None:
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for set_key, set_name in self._data[gid]:
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for i, (set_key, set_name) in enumerate(self._data[gid]):
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print(self._src_id, set_key, set_name, i)
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self.set_combobox.addItem(set_name, userData=set_key)
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print(self.set_combobox.currentIndex())
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if self._src_id == set_key:
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set_idx = i
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print(set_idx)
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if set_idx > -1:
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self.set_combobox.setCurrentIndex(set_idx)
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def collect_parameter(self):
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xlog = self.xlog_checkBox.isChecked()
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@ -71,21 +89,35 @@ class InterpolDialog(QtWidgets.QDialog, Ui_Dialog):
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x_src = (start, stop, step, loggy)
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else:
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x_src = (self.set_combobox.currentData(QtCore.Qt.UserRole),)
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self._src_id = self.set_combobox.currentData(QtCore.Qt.ItemDataRole.UserRole)
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x_src = (self._src_id,)
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dest_graph = self.dest_combobox.currentData(QtCore.Qt.UserRole)
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self._dest_graph = self.dest_combobox.currentData(QtCore.Qt.ItemDataRole.UserRole)
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use_data = []
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for i in range(self.listWidget.count()):
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item = self.listWidget.item(i)
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if item.checkState() == QtCore.Qt.Checked:
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use_data.append(item.data(QtCore.Qt.UserRole))
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if item.checkState() == QtCore.Qt.CheckState.Checked:
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use_data.append(item.data(QtCore.Qt.ItemDataRole.UserRole))
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self.new_data.emit(use_data, mode, xlog, ylog, x_src, dest_graph)
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self.new_data.emit(use_data, mode, xlog, ylog, x_src, self._dest_graph)
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return True
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def accept(self):
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success = self.collect_parameter()
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if success:
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super().accept()
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def _save_state(self):
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self._src_id = self.set_combobox.currentData(QtCore.Qt.ItemDataRole.UserRole)
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self._dest_graph = self.dest_combobox.currentData(QtCore.Qt.ItemDataRole.UserRole)
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||||
@QtCore.pyqtSlot(QtWidgets.QAbstractButton, name='on_buttonBox_clicked')
|
||||
def check_next_actions(self, bttn: QtWidgets.QAbstractButton):
|
||||
role = self.buttonBox.buttonRole(bttn)
|
||||
self._save_state()
|
||||
|
||||
if role == self.buttonBox.ButtonRole.RejectRole:
|
||||
self.close()
|
||||
else:
|
||||
success = self.collect_parameter()
|
||||
|
||||
if success and role == self.buttonBox.ButtonRole.AcceptRole:
|
||||
self.close()
|
||||
|
||||
|
||||
@ -540,26 +540,37 @@ class Points:
|
||||
|
||||
return self
|
||||
|
||||
def cut(self, low_lim: float = None, high_lim: float = None):
|
||||
def cut(self, x_low: float = None, x_high: float = None, y_low: float = None, y_high: float = None):
|
||||
"""
|
||||
Cut
|
||||
Args:
|
||||
low_lim:
|
||||
high_lim:
|
||||
x_low: Lower limit
|
||||
x_high: Upper limit for x values
|
||||
y_low: Lower limit
|
||||
y_high: Upper limit for x valuew
|
||||
|
||||
Returns:
|
||||
|
||||
"""
|
||||
if low_lim is None and high_lim is None:
|
||||
|
||||
if x_low is None and x_high is None and y_low is None and y_high is None:
|
||||
return self
|
||||
|
||||
if low_lim is None:
|
||||
low_lim = np.min(self._x)
|
||||
if x_low is None:
|
||||
x_low = np.min(self._x)-1
|
||||
|
||||
if high_lim is None:
|
||||
high_lim = np.max(self._x)
|
||||
if x_high is None:
|
||||
x_high = np.max(self._x)+1
|
||||
|
||||
_mask = np.ma.masked_inside(self._x, low_lim, high_lim).mask
|
||||
if y_low is None:
|
||||
y_low = np.min(self._y.real)-1
|
||||
|
||||
if y_high is None:
|
||||
y_high = np.max(self._y.real)+1
|
||||
|
||||
x_mask = (self._x >= x_low) & (self._x <= x_high)
|
||||
y_mask = (self._y.real >= y_low) & (self._y.real <= y_high)
|
||||
_mask = x_mask & y_mask
|
||||
|
||||
self._x = self._x[_mask]
|
||||
self._y = self._y[_mask]
|
||||
|
||||
@ -191,6 +191,18 @@ class PowerLawCross:
|
||||
return ret_val
|
||||
|
||||
|
||||
class Sinc:
|
||||
type = 'Basic'
|
||||
name = 'Sinc'
|
||||
equation = 'C * sinc((x-x_{0})/w)'
|
||||
params = ['C', 'x_{0}', 'w']
|
||||
|
||||
@staticmethod
|
||||
def func(x, c: float, x0: float, w: float):
|
||||
# numpy sinc is defined as sin(pi*x)/(pi*x)
|
||||
return c * np.sinc(((x-x0)/w)/np.pi)
|
||||
|
||||
|
||||
class Sine:
|
||||
"""
|
||||
Wavy sine function
|
||||
|
||||
@ -172,6 +172,14 @@
|
||||
<property name="title">
|
||||
<string>&Data</string>
|
||||
</property>
|
||||
<widget class="QMenu" name="menuCut_to_visible_range">
|
||||
<property name="title">
|
||||
<string>Cut to visible range</string>
|
||||
</property>
|
||||
<addaction name="separator"/>
|
||||
<addaction name="action_cut_xaxis"/>
|
||||
<addaction name="action_cut_yaxis"/>
|
||||
</widget>
|
||||
<addaction name="action_new_set"/>
|
||||
<addaction name="action_delete_sets"/>
|
||||
<addaction name="actionMove_between_plots"/>
|
||||
@ -181,7 +189,7 @@
|
||||
<addaction name="action_sort_pts"/>
|
||||
<addaction name="actionSkip_points"/>
|
||||
<addaction name="separator"/>
|
||||
<addaction name="action_cut"/>
|
||||
<addaction name="menuCut_to_visible_range"/>
|
||||
<addaction name="separator"/>
|
||||
<addaction name="actionChange_datatypes"/>
|
||||
</widget>
|
||||
@ -862,11 +870,6 @@
|
||||
<string>Integration...</string>
|
||||
</property>
|
||||
</action>
|
||||
<action name="action_cut">
|
||||
<property name="text">
|
||||
<string>Cut to visible range</string>
|
||||
</property>
|
||||
</action>
|
||||
<action name="actionMove_between_plots">
|
||||
<property name="text">
|
||||
<string>Move sets...</string>
|
||||
@ -1030,6 +1033,22 @@
|
||||
<string>Exclude region</string>
|
||||
</property>
|
||||
</action>
|
||||
<action name="action_cut_xaxis">
|
||||
<property name="text">
|
||||
<string>x axis</string>
|
||||
</property>
|
||||
<property name="toolTip">
|
||||
<string>Remove data points outside visible x range.</string>
|
||||
</property>
|
||||
</action>
|
||||
<action name="action_cut_yaxis">
|
||||
<property name="text">
|
||||
<string>y axis</string>
|
||||
</property>
|
||||
<property name="toolTip">
|
||||
<string>Remove data points outside visible y range. Uses real part of points.</string>
|
||||
</property>
|
||||
</action>
|
||||
</widget>
|
||||
<customwidgets>
|
||||
<customwidget>
|
||||
|
||||
@ -119,7 +119,7 @@
|
||||
<enum>Qt::Horizontal</enum>
|
||||
</property>
|
||||
<property name="standardButtons">
|
||||
<set>QDialogButtonBox::Cancel|QDialogButtonBox::Ok</set>
|
||||
<set>QDialogButtonBox::Apply|QDialogButtonBox::Cancel|QDialogButtonBox::Ok</set>
|
||||
</property>
|
||||
</widget>
|
||||
</item>
|
||||
@ -300,38 +300,5 @@
|
||||
<tabstop>dest_combobox</tabstop>
|
||||
</tabstops>
|
||||
<resources/>
|
||||
<connections>
|
||||
<connection>
|
||||
<sender>buttonBox</sender>
|
||||
<signal>accepted()</signal>
|
||||
<receiver>Dialog</receiver>
|
||||
<slot>accept()</slot>
|
||||
<hints>
|
||||
<hint type="sourcelabel">
|
||||
<x>251</x>
|
||||
<y>490</y>
|
||||
</hint>
|
||||
<hint type="destinationlabel">
|
||||
<x>157</x>
|
||||
<y>274</y>
|
||||
</hint>
|
||||
</hints>
|
||||
</connection>
|
||||
<connection>
|
||||
<sender>buttonBox</sender>
|
||||
<signal>rejected()</signal>
|
||||
<receiver>Dialog</receiver>
|
||||
<slot>reject()</slot>
|
||||
<hints>
|
||||
<hint type="sourcelabel">
|
||||
<x>319</x>
|
||||
<y>490</y>
|
||||
</hint>
|
||||
<hint type="destinationlabel">
|
||||
<x>286</x>
|
||||
<y>274</y>
|
||||
</hint>
|
||||
</hints>
|
||||
</connection>
|
||||
</connections>
|
||||
<connections/>
|
||||
</ui>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user