updated README for install instructions, setup.py installs are deprecated
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@ -15,7 +15,9 @@ Pygmx needs mainly two python packages to be installed, which are available in a
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### Gromacs installation
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Pygmx requires the shared library and header files of Gromacs 2018 to be installed.
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Pygmx requires the shared library and header files of GROMACS 2018 to be installed.
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Example install scripts are provided. For Debian 12 a patch file is included to be able to compile GROMACS 2018.8.
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#### Through package manager
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@ -33,10 +35,11 @@ since the file io functions do not use these features.
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When the requirements are met, installing pygmx into the local Python installation can be achieved by navigating to the top folder of the repository and running the command
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python setup.py install
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pip3 install -r requirements.txt
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pip install .
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This builds the cython modules and installs them into the local python distribution.
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To check if everyting works, run the following command from a directory out of the repository
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To check if everyting works, run the following command **from a directory outside of the repository**
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python -c 'import pygmx'
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