change graphing from matlotlib to pyqtgraph
This commit is contained in:
parent
8fc316f2ff
commit
71bdfa5462
@ -2,8 +2,8 @@
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# Form implementation generated from reading ui file 'ConductivityGroupBox.ui'
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#
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# Created: Wed Jul 10 18:57:09 2013
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# by: PyQt4 UI code generator 4.10.2
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# Created: Fri Feb 21 17:15:59 2014
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# by: PyQt4 UI code generator 4.10.3
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#
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# WARNING! All changes made in this file will be lost!
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@ -26,7 +26,7 @@ except AttributeError:
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class Ui_ConductivityGroupBox(object):
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def setupUi(self, ConductivityGroupBox):
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ConductivityGroupBox.setObjectName(_fromUtf8("ConductivityGroupBox"))
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ConductivityGroupBox.resize(289, 168)
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ConductivityGroupBox.resize(255, 150)
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sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
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sizePolicy.setHorizontalStretch(0)
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sizePolicy.setVerticalStretch(0)
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@ -37,7 +37,7 @@ class Ui_ConductivityGroupBox(object):
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self.gridLayout_2.setObjectName(_fromUtf8("gridLayout_2"))
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self.gridLayout = QtGui.QGridLayout()
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self.gridLayout.setSizeConstraint(QtGui.QLayout.SetFixedSize)
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self.gridLayout.setSpacing(5)
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self.gridLayout.setSpacing(1)
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self.gridLayout.setContentsMargins(0, 0, -1, -1)
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self.gridLayout.setObjectName(_fromUtf8("gridLayout"))
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self.checkBox_2 = QtGui.QCheckBox(ConductivityGroupBox)
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@ -73,6 +73,7 @@ class Ui_ConductivityGroupBox(object):
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sizePolicy.setVerticalStretch(0)
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sizePolicy.setHeightForWidth(self.pushButton_2.sizePolicy().hasHeightForWidth())
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self.pushButton_2.setSizePolicy(sizePolicy)
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self.pushButton_2.setAutoRepeat(True)
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self.pushButton_2.setObjectName(_fromUtf8("pushButton_2"))
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self.gridLayout.addWidget(self.pushButton_2, 1, 3, 1, 1)
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self.label_2 = QtGui.QLabel(ConductivityGroupBox)
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@ -90,6 +91,8 @@ class Ui_ConductivityGroupBox(object):
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sizePolicy.setVerticalStretch(0)
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sizePolicy.setHeightForWidth(self.pushButton_5.sizePolicy().hasHeightForWidth())
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self.pushButton_5.setSizePolicy(sizePolicy)
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self.pushButton_5.setMinimumSize(QtCore.QSize(50, 0))
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self.pushButton_5.setAutoRepeat(True)
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self.pushButton_5.setObjectName(_fromUtf8("pushButton_5"))
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self.gridLayout.addWidget(self.pushButton_5, 3, 2, 1, 1)
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self.pushButton_6 = QtGui.QPushButton(ConductivityGroupBox)
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@ -98,6 +101,7 @@ class Ui_ConductivityGroupBox(object):
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sizePolicy.setVerticalStretch(0)
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sizePolicy.setHeightForWidth(self.pushButton_6.sizePolicy().hasHeightForWidth())
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self.pushButton_6.setSizePolicy(sizePolicy)
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self.pushButton_6.setAutoRepeat(True)
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self.pushButton_6.setObjectName(_fromUtf8("pushButton_6"))
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self.gridLayout.addWidget(self.pushButton_6, 3, 3, 1, 1)
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self.lineEdit_2 = QtGui.QLineEdit(ConductivityGroupBox)
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@ -137,6 +141,8 @@ class Ui_ConductivityGroupBox(object):
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sizePolicy.setVerticalStretch(0)
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sizePolicy.setHeightForWidth(self.pushButton_3.sizePolicy().hasHeightForWidth())
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self.pushButton_3.setSizePolicy(sizePolicy)
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self.pushButton_3.setMinimumSize(QtCore.QSize(50, 0))
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self.pushButton_3.setAutoRepeat(True)
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self.pushButton_3.setObjectName(_fromUtf8("pushButton_3"))
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self.gridLayout.addWidget(self.pushButton_3, 2, 2, 1, 1)
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self.pushButton_4 = QtGui.QPushButton(ConductivityGroupBox)
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@ -145,6 +151,7 @@ class Ui_ConductivityGroupBox(object):
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sizePolicy.setVerticalStretch(0)
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sizePolicy.setHeightForWidth(self.pushButton_4.sizePolicy().hasHeightForWidth())
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self.pushButton_4.setSizePolicy(sizePolicy)
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self.pushButton_4.setAutoRepeat(True)
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self.pushButton_4.setObjectName(_fromUtf8("pushButton_4"))
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self.gridLayout.addWidget(self.pushButton_4, 2, 3, 1, 1)
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self.pushButton_1 = QtGui.QPushButton(ConductivityGroupBox)
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@ -153,6 +160,8 @@ class Ui_ConductivityGroupBox(object):
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sizePolicy.setVerticalStretch(0)
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sizePolicy.setHeightForWidth(self.pushButton_1.sizePolicy().hasHeightForWidth())
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self.pushButton_1.setSizePolicy(sizePolicy)
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self.pushButton_1.setMinimumSize(QtCore.QSize(50, 0))
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self.pushButton_1.setAutoRepeat(True)
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self.pushButton_1.setAutoDefault(False)
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self.pushButton_1.setDefault(False)
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self.pushButton_1.setFlat(False)
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@ -6,8 +6,8 @@
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<rect>
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<x>0</x>
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<y>0</y>
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<width>289</width>
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<height>168</height>
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<width>255</width>
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<height>150</height>
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</rect>
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</property>
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<property name="sizePolicy">
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@ -41,7 +41,7 @@
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<number>0</number>
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</property>
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<property name="spacing">
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<number>5</number>
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<number>1</number>
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</property>
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<item row="2" column="4">
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<widget class="QCheckBox" name="checkBox_2">
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@ -106,6 +106,9 @@
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<property name="text">
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<string>+</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="2" column="0">
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@ -132,9 +135,18 @@
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<verstretch>0</verstretch>
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</sizepolicy>
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</property>
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<property name="minimumSize">
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<size>
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<width>50</width>
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<height>0</height>
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</size>
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</property>
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<property name="text">
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<string>-</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="3" column="3">
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@ -148,6 +160,9 @@
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<property name="text">
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<string>+</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="2" column="1">
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@ -219,9 +234,18 @@
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<verstretch>0</verstretch>
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</sizepolicy>
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</property>
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<property name="minimumSize">
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<size>
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<width>50</width>
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<height>0</height>
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</size>
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</property>
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<property name="text">
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<string>-</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="2" column="3">
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@ -235,6 +259,9 @@
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<property name="text">
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<string>+</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="1" column="2">
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@ -245,9 +272,18 @@
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<verstretch>0</verstretch>
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</sizepolicy>
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</property>
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<property name="minimumSize">
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<size>
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<width>50</width>
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<height>0</height>
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</size>
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</property>
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<property name="text">
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<string>-</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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<property name="autoDefault">
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<bool>false</bool>
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</property>
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@ -34,7 +34,7 @@ class ConductivityWidget(QGroupBox):
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self.signalMapper.mapped.connect(self.changeValues)
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def changeValues(self, num):
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logstep = 1.29154967 # 10 log even steps per decade
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logstep = 10**0.05 # 10 log even steps per decade
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linstep = 0.05
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# 0-3 down/up for d_eps and tau, respectively
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# 4-7 down, up for a, b
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@ -2,8 +2,8 @@
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# Form implementation generated from reading ui file 'PeakGroupBox.ui'
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#
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# Created: Wed Jul 10 18:57:09 2013
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# by: PyQt4 UI code generator 4.10.2
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# Created: Fri Feb 21 17:15:59 2014
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# by: PyQt4 UI code generator 4.10.3
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#
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# WARNING! All changes made in this file will be lost!
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@ -68,6 +68,7 @@ class Ui_PeakGroupBox(object):
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sizePolicy.setHeightForWidth(self.pushButton_7.sizePolicy().hasHeightForWidth())
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self.pushButton_7.setSizePolicy(sizePolicy)
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self.pushButton_7.setMinimumSize(QtCore.QSize(56, 0))
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self.pushButton_7.setAutoRepeat(True)
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self.pushButton_7.setObjectName(_fromUtf8("pushButton_7"))
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self.gridLayout.addWidget(self.pushButton_7, 4, 2, 1, 1)
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self.label_2 = QtGui.QLabel(PeakGroupBox)
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@ -96,6 +97,7 @@ class Ui_PeakGroupBox(object):
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self.pushButton_1.setSizePolicy(sizePolicy)
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self.pushButton_1.setMinimumSize(QtCore.QSize(56, 0))
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self.pushButton_1.setBaseSize(QtCore.QSize(0, 0))
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self.pushButton_1.setAutoRepeat(True)
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self.pushButton_1.setAutoDefault(False)
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self.pushButton_1.setDefault(False)
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self.pushButton_1.setFlat(False)
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@ -109,6 +111,7 @@ class Ui_PeakGroupBox(object):
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sizePolicy.setHeightForWidth(self.pushButton_6.sizePolicy().hasHeightForWidth())
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self.pushButton_6.setSizePolicy(sizePolicy)
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self.pushButton_6.setMinimumSize(QtCore.QSize(56, 0))
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self.pushButton_6.setAutoRepeat(True)
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self.pushButton_6.setObjectName(_fromUtf8("pushButton_6"))
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self.gridLayout.addWidget(self.pushButton_6, 3, 3, 1, 1)
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self.label = QtGui.QLabel(PeakGroupBox)
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@ -127,6 +130,7 @@ class Ui_PeakGroupBox(object):
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sizePolicy.setHeightForWidth(self.pushButton_5.sizePolicy().hasHeightForWidth())
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self.pushButton_5.setSizePolicy(sizePolicy)
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self.pushButton_5.setMinimumSize(QtCore.QSize(56, 0))
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self.pushButton_5.setAutoRepeat(True)
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self.pushButton_5.setObjectName(_fromUtf8("pushButton_5"))
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self.gridLayout.addWidget(self.pushButton_5, 3, 2, 1, 1)
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self.removeButton = QtGui.QPushButton(PeakGroupBox)
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@ -146,6 +150,7 @@ class Ui_PeakGroupBox(object):
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sizePolicy.setHeightForWidth(self.pushButton_8.sizePolicy().hasHeightForWidth())
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self.pushButton_8.setSizePolicy(sizePolicy)
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self.pushButton_8.setMinimumSize(QtCore.QSize(56, 0))
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self.pushButton_8.setAutoRepeat(True)
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self.pushButton_8.setObjectName(_fromUtf8("pushButton_8"))
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self.gridLayout.addWidget(self.pushButton_8, 4, 3, 1, 1)
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self.label_3 = QtGui.QLabel(PeakGroupBox)
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@ -165,6 +170,7 @@ class Ui_PeakGroupBox(object):
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sizePolicy.setHeightForWidth(self.pushButton_4.sizePolicy().hasHeightForWidth())
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self.pushButton_4.setSizePolicy(sizePolicy)
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self.pushButton_4.setMinimumSize(QtCore.QSize(56, 0))
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self.pushButton_4.setAutoRepeat(True)
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self.pushButton_4.setObjectName(_fromUtf8("pushButton_4"))
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self.gridLayout.addWidget(self.pushButton_4, 2, 3, 1, 1)
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self.label_1 = QtGui.QLabel(PeakGroupBox)
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@ -207,6 +213,7 @@ class Ui_PeakGroupBox(object):
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sizePolicy.setHeightForWidth(self.pushButton_3.sizePolicy().hasHeightForWidth())
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self.pushButton_3.setSizePolicy(sizePolicy)
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self.pushButton_3.setMinimumSize(QtCore.QSize(56, 0))
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self.pushButton_3.setAutoRepeat(True)
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self.pushButton_3.setObjectName(_fromUtf8("pushButton_3"))
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self.gridLayout.addWidget(self.pushButton_3, 2, 2, 1, 1)
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self.label_4 = QtGui.QLabel(PeakGroupBox)
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@ -229,6 +236,7 @@ class Ui_PeakGroupBox(object):
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sizePolicy.setHeightForWidth(self.pushButton_2.sizePolicy().hasHeightForWidth())
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self.pushButton_2.setSizePolicy(sizePolicy)
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self.pushButton_2.setMinimumSize(QtCore.QSize(56, 0))
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self.pushButton_2.setAutoRepeat(True)
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self.pushButton_2.setObjectName(_fromUtf8("pushButton_2"))
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self.gridLayout.addWidget(self.pushButton_2, 1, 3, 1, 1)
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self.gridLayout.setColumnStretch(1, 1)
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@ -108,6 +108,9 @@
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<property name="text">
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<string>-</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="2" column="0">
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@ -168,6 +171,9 @@
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<property name="text">
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<string>-</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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<property name="autoDefault">
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<bool>false</bool>
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</property>
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@ -199,6 +205,9 @@
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<property name="text">
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<string>+</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="0" column="4">
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@ -234,6 +243,9 @@
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<property name="text">
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<string>-</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="0" column="1">
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@ -275,6 +287,9 @@
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<property name="text">
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<string>+</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="3" column="0">
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@ -313,6 +328,9 @@
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<property name="text">
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<string>+</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="1" column="0">
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@ -402,6 +420,9 @@
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<property name="text">
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<string>-</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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<item row="4" column="0">
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@ -447,6 +468,9 @@
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<property name="text">
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<string>+</string>
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</property>
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<property name="autoRepeat">
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<bool>true</bool>
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</property>
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</widget>
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</item>
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</layout>
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@ -67,9 +67,8 @@ class PeakWidget(QGroupBox):
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self.setTitle("Peak %i" % id)
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def setColor(self, color):
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r, g, b = color
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palette = self.palette()
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palette.setColor(QPalette.Foreground, QColor(r, g, b))
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palette.setColor(QPalette.Foreground, color)
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self.setPalette(palette)
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def peakParameter(self):
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344
QDS.py
344
QDS.py
@ -7,110 +7,28 @@ import signal
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from PyQt4.QtCore import *
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from PyQt4.QtGui import *
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import matplotlib
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from mathlib import fit_anneal, fit_lbfgsb, fit_odr, hn, id_to_color
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from matplotlibWidget import PlotWidget
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from mathlib import fit_anneal, fit_lbfgsb, fit_odr, hn
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matplotlib.use('agg')
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#from matplotlibWidget import PlotWidget
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from matplotlib import pyplot
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from matplotlib.colors import hex2color
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#matplotlib.rc_file("default.mplrc")
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import numpy as N
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import QDSMain
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import PeakWidget
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from data import Data, Conductivity, conductivity
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from data import Data, Conductivity, conductivity, Peak
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import pyqtgraph as pg
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#import yaff
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def sigint_handler(*args):
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"""Handler for the SIGINT signal (CTRL + C).
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"""
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sys.stderr.write('\r')
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if QMessageBox.question(None, '', "Are you sure you want to quit?",
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QMessageBox.Yes | QMessageBox.No,
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QMessageBox.No) == QMessageBox.Yes:
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QApplication.quit()
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def tau_peak(f, a, b):
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tau = (N.sin(N.pi * a / 2. / (b + 1)) / N.sin(N.pi * a * b / 2. / (b + 1))) ** (1 / a)
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tau /= 2 * N.pi * f
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return tau
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class Peak(QObject):
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changedData = pyqtSignal()
|
||||
|
||||
def __init__(self, id=None, mpl=None):
|
||||
QObject.__init__(self)
|
||||
super(Peak, self).__init__()
|
||||
|
||||
self.color = id_to_color(id)
|
||||
self.widget = PeakWidget.PeakWidget()
|
||||
self.widget.setId(id)
|
||||
self.widget.setColor(map(int, [255 * i for i in self.color]))
|
||||
self.widget.changedTable.connect(self.updatePeak)
|
||||
self.mpl = mpl
|
||||
self.mpl_line = None
|
||||
|
||||
|
||||
def getParameter(self):
|
||||
p = self.widget.peakParameter()
|
||||
return p
|
||||
|
||||
def getFixed(self):
|
||||
p = self.widget.fixedParameter()
|
||||
return p
|
||||
|
||||
def setParameter(self, delta_eps=None, tau=None, a=None, b=None):
|
||||
self.widget.updateTable(delta_eps, tau, a, b)
|
||||
self.updatePeak()
|
||||
|
||||
def updatePeak(self):
|
||||
# get current axis limits
|
||||
x_min, x_max = self.mpl.canvas.axes.get_xlim()
|
||||
y_min, y_max = self.mpl.canvas.axes.get_ylim()
|
||||
|
||||
nu = N.logspace(N.log10(x_min), N.log10(x_max), 2048)
|
||||
y = hn(self.getParameter(), nu)
|
||||
# clip data to axes limits
|
||||
mask = (y < y_max) & (y > y_min)
|
||||
y = y[mask]
|
||||
nu = nu[mask]
|
||||
if self.mpl_line == None:
|
||||
self.mpl_line, = self.mpl.canvas.axes.loglog(nu, y, '--', label="Peak %i" % (self.widget.id),
|
||||
animated=True) # peak
|
||||
self.mpl_line.set_color(self.color)
|
||||
else:
|
||||
self.mpl_line.set_xdata(nu)
|
||||
self.mpl_line.set_ydata(y)
|
||||
self.changedData.emit()
|
||||
|
||||
|
||||
class AppWindow(QMainWindow):
|
||||
def __init__(self, parent=None):
|
||||
super(AppWindow, self).__init__(parent)
|
||||
@ -132,6 +50,13 @@ class AppWindow(QMainWindow):
|
||||
openFile.setShortcut(QKeySequence.Open)
|
||||
openFile.triggered.connect(self.openFile)
|
||||
fileMenu.addAction(openFile)
|
||||
|
||||
saveFile = QAction("&Save Fit Result", self)
|
||||
saveFile.setShortcut(QKeySequence.Save)
|
||||
saveFile.triggered.connect(self.saveFitResult)
|
||||
fileMenu.addAction(saveFile)
|
||||
|
||||
|
||||
# fitting methods
|
||||
fitMenu = self.menuBar().addMenu("Standard Fits")
|
||||
# lm
|
||||
@ -159,39 +84,41 @@ class AppWindow(QMainWindow):
|
||||
self.signalMapper.mapped.connect(self.fitData)
|
||||
|
||||
# save fitted values
|
||||
self.ui.actionSave_FitResult.triggered.connect(self.saveFitResult)
|
||||
# the plot area, a matplotlib widget
|
||||
self.mplWidget = PlotWidget(self.ui.mplWidget)
|
||||
self.mplWidget.canvas.draw()
|
||||
self.mplWidget.updateGeometry()
|
||||
|
||||
# what to do with CIDs?
|
||||
self.cid = []
|
||||
self.cid.append(self.mplWidget.canvas.mpl_connect("button_press_event", self.mpl_button_press))
|
||||
self.cid.append(self.mplWidget.canvas.mpl_connect("pick_event", self.mpl_button_pick))
|
||||
self.cid.append(self.mplWidget.canvas.mpl_connect("button_release_event", self.mpl_button_release))
|
||||
#self.cid.append(self.mplWidget.canvas.mpl_connect("resize_event", self.myresizeEvent))
|
||||
self.mplWidget.toolbar.spanSelectedTrigger.connect(self.set_fit_xlimits)
|
||||
#self.ui.actionSave_FitResult.triggered.connect(self.saveFitResult)# replaced by menu
|
||||
|
||||
def resizeEvent(self, evt):
|
||||
"""resizing the main window executes this method
|
||||
TODO: FIX RESIZEING keeping mainwindow maximised for now
|
||||
:param evt:
|
||||
"""
|
||||
self.mplWidget.canvas.draw()
|
||||
self.mplWidget._bg_cache = self.mplWidget.canvas.copy_from_bbox(self.mplWidget.canvas.axes.bbox)
|
||||
for line in self.mplWidget.canvas.axes.get_lines():
|
||||
line.set_animated(False)
|
||||
self.mplWidget.canvas.draw()
|
||||
for line in self.mplWidget.canvas.axes.get_lines():
|
||||
line.set_animated(True)
|
||||
self.data = Data()
|
||||
|
||||
self.fit_boundary = pg.LinearRegionItem(brush=QColor(254,254,254,10))
|
||||
self.ui.graphicsView.addItem(self.data.data_curve)
|
||||
self.ui.graphicsView.addItem(self.data.fitted_curve)
|
||||
self.ui.graphicsView.addItem(self.fit_boundary)
|
||||
self.ui.graphicsView.setLogMode(x=True, y=True)
|
||||
self.ui.graphicsView.showGrid(x=True, y=True)
|
||||
self.ui.graphicsView.setLabel("bottom","Frequency",units="Hz")
|
||||
self.ui.graphicsView.setLabel("left", "Dielectric loss", units="Debye")
|
||||
self.peak_box_layout = QGridLayout()
|
||||
self.ui.scrollAreaWidgetContents.setLayout(self.peak_box_layout)
|
||||
|
||||
|
||||
def mousePressEvent(self, evt):
|
||||
pos = evt.pos()
|
||||
if self.ui.graphicsView.sceneRect().contains(pos):
|
||||
# translate position to data coordinates
|
||||
data_pos = self.ui.graphicsView.plotItem.vb.mapSceneToView(pos)
|
||||
if self.ui.actionAdd_Peak.isChecked() and not self.ui.actionAdd_Cond.isChecked():
|
||||
self.addPeak(data_pos)
|
||||
self.ui.actionAdd_Peak.setChecked(False)
|
||||
if self.ui.actionAdd_Cond.isChecked() and not self.ui.actionAdd_Peak.isChecked():
|
||||
self.addCond(data_pos)
|
||||
self.ui.actionAdd_Cond.setChecked(False)
|
||||
|
||||
def saveFitResult(self):
|
||||
"""
|
||||
Saving fit parameters to fitresults.log
|
||||
including temperature
|
||||
"""
|
||||
self.saveFitFigure()
|
||||
if not os.path.exists("fitresults.log"):
|
||||
f = open("fitresults.log", "w")
|
||||
else:
|
||||
@ -215,44 +142,56 @@ class AppWindow(QMainWindow):
|
||||
N.savetxt(f, N.array([pars, ]), fmt=parfmt, delimiter=" ")
|
||||
f.close()
|
||||
|
||||
def saveFitFigure(self):
|
||||
fig = pyplot.Figure(figsize=(3.54, 2.75))
|
||||
font = {'family' : 'sans serif',
|
||||
'weight' : 'normal',
|
||||
'size' : 16}
|
||||
|
||||
matplotlib.rc('font', **font)
|
||||
print self.data.epsilon_fit.shape, type(self.data.epsilon_fit)
|
||||
pyplot.loglog(self.data.frequency, self.data.epsilon.imag, 'bo', markersize=4, label="Data")
|
||||
pyplot.loglog(self.data.frequency, self.data.epsilon_fit, 'r-', lw=2, label="Fit")
|
||||
|
||||
for i,peak in enumerate(self.peakBoxes):
|
||||
f,eps = peak.get_data()
|
||||
color = hex2color(str(peak.get_color().name()))
|
||||
pyplot.loglog(f,eps, ls="--", color=color , lw=1.5, label="Peak %i"%i)
|
||||
|
||||
if self.Conductivity != None:
|
||||
f,eps = self.Conductivity.get_conductivity()
|
||||
color = hex2color(str(self.Conductivity.get_color().name()))
|
||||
pyplot.loglog(f,eps, ls="-.", color=color, lw=1.5, label="Cond.")
|
||||
f,eps = self.Conductivity.get_epsilon_static()
|
||||
pyplot.loglog(f,eps, ls=":", color=color, lw=1.5, label=r'$\eps_0$')
|
||||
|
||||
pyplot.legend(title="T=%.1f K"%(self.data.meta["T"]) )
|
||||
pyplot.grid()
|
||||
pyplot.xlabel('f/Hz')
|
||||
pyplot.ylabel('eps"')
|
||||
pyplot.savefig("test.png")
|
||||
fig.clear()
|
||||
|
||||
def set_fit_xlimits(self, xmin, xmax):
|
||||
self.data.fit_limits = (xmin, xmax, None, None)
|
||||
self.updatePlot()
|
||||
|
||||
def mpl_button_release(self, event):
|
||||
ax = self.mplWidget.canvas.axes
|
||||
if self.picked_artist:
|
||||
if not event.inaxes: # moved outside the plot, add back to original position
|
||||
ax.add_artist(self.picked_artist)
|
||||
else: # we move one of the three points determinig the peak
|
||||
self.picked_artist.set_xdata(event.xdata)
|
||||
self.picked_artist.set_ydata(event.ydata)
|
||||
ax.add_artist(self.picked_artist)
|
||||
for peak in self.peakBoxes.keys():
|
||||
peak.updatePeak()
|
||||
self.picked_artist = None
|
||||
self.mplWidget.canvas.draw_idle()
|
||||
|
||||
def mpl_button_pick(self, event):
|
||||
self.picked_artist = event.artist
|
||||
event.artist.remove()
|
||||
self.mplWidget.canvas.draw_idle()
|
||||
|
||||
def addCond(self, pos):
|
||||
if self.Conductivity != None:
|
||||
return
|
||||
self.statusBar().showMessage("Click on graph")
|
||||
self.Conductivity = Conductivity(mpl=self.mplWidget)
|
||||
self.Conductivity = Conductivity(mpl=self.ui.graphicsView, limits=self.data.fit_limits)
|
||||
self.Conductivity.changedData.connect(self.updatePlot)
|
||||
self.Conductivity.setParameter(0, 1 / (pos[0] / pos[1] / 2 / N.pi), 1.0)
|
||||
self.Conductivity.setParameter(0, 1 / (10**pos.x() / 10**pos.y() / 2 / N.pi), 1.0)
|
||||
self.ui.scrollAreaWidgetContents.layout().addWidget(self.Conductivity.widget)
|
||||
self.Conductivity.widget.ui.removeButton.clicked.connect(self.delCond)
|
||||
|
||||
def delCond(self):
|
||||
self.cond_param = None
|
||||
self.cond = None
|
||||
self.Conductivity.mpl_line.remove()
|
||||
self.Conductivity.mpl_line_static.remove()
|
||||
self.ui.graphicsView.removeItem(self.Conductivity.mpl_line)
|
||||
self.ui.graphicsView.removeItem(self.Conductivity.mpl_line_static)
|
||||
del self.Conductivity
|
||||
self.Conductivity = None
|
||||
self.updatePlot()
|
||||
@ -262,27 +201,27 @@ class AppWindow(QMainWindow):
|
||||
self.peakId += 1
|
||||
self.statusBar().showMessage("Select Peak Position")
|
||||
|
||||
peak = Peak(id=self.peakId, mpl=self.mplWidget)
|
||||
peak = Peak(id=self.peakId, mpl=self.ui.graphicsView, limits=self.data.fit_limits)
|
||||
# connect to delPeak
|
||||
peak.widget.ui.removeButton.clicked.connect(self.delPeak)
|
||||
|
||||
peak.setParameter(delta_eps=pos[1], tau=1 / (2. * N.pi * pos[0]), a=1, b=1)
|
||||
|
||||
peak.changedData.connect(self.updatePlot)
|
||||
peak.setParameter(delta_eps=10**pos.y(), tau=1 / (10**pos.x()/2/N.pi), a=1, b=1)
|
||||
|
||||
self.peakBoxes[peak] = None
|
||||
for pb in self.peakBoxes.keys():
|
||||
self.ui.scrollAreaWidgetContents.layout().addWidget(pb.widget)
|
||||
self.updatePlot()
|
||||
wdgt_num = self.peak_box_layout.rowCount()
|
||||
for i,pb in enumerate(self.peakBoxes.keys()):
|
||||
self.peak_box_layout.addWidget(pb.widget, i+wdgt_num, 0)
|
||||
#self.ui.scrollArea.resize()
|
||||
# self.updatePlot()
|
||||
|
||||
def delPeak(self):
|
||||
deletePeaks = []
|
||||
for i in xrange(self.ui.scrollAreaWidgetContents.layout().count()):
|
||||
for i in xrange(self.peak_box_layout.count()):
|
||||
print i
|
||||
|
||||
for i, peak in enumerate(self.peakBoxes.keys()):
|
||||
if peak.widget.isHidden():
|
||||
peak.mpl_line.remove()
|
||||
self.ui.graphicsView.removeItem(peak.mpl_line)
|
||||
deletePeaks.append(peak)
|
||||
for peak in deletePeaks:
|
||||
self.peakBoxes.pop(peak)
|
||||
@ -300,6 +239,9 @@ class AppWindow(QMainWindow):
|
||||
[start_parameter.append(i) for i in pb.getParameter()]
|
||||
[fixed_params.append(i) for i in pb.getFixed()]
|
||||
|
||||
log10fmin, log10fmax = self.fit_boundary.getRegion()
|
||||
xmin,xmax,ymin,ymax = self.data.fit_limits
|
||||
self.data.fit_limits = [10**log10fmin, 10**log10fmax,ymin,ymax]
|
||||
fit_methods = [fit_odr, fit_lbfgsb, fit_anneal]
|
||||
print "StartParameter", start_parameter
|
||||
print "FixedParameter", fixed_params
|
||||
@ -318,27 +260,12 @@ class AppWindow(QMainWindow):
|
||||
#print u"\u0394\u03b5"
|
||||
self.updatePlot()
|
||||
|
||||
def mpl_button_press(self, event):
|
||||
"""
|
||||
Handles the clicks on the matplotlib figure canvas
|
||||
"""
|
||||
if self.ui.actionAdd_Peak.isChecked() and event.inaxes:
|
||||
x, y = event.xdata, event.ydata
|
||||
self.addPeak((x, y))
|
||||
self.ui.actionAdd_Peak.setChecked(False)
|
||||
self.statusBar().clear()
|
||||
if self.ui.actionAdd_Cond.isChecked() and event.inaxes:
|
||||
x, y = event.xdata, event.ydata
|
||||
self.addCond((x, y))
|
||||
self.ui.actionAdd_Cond.setChecked(False)
|
||||
self.statusBar().clear()
|
||||
|
||||
def openFile(self):
|
||||
ax = self.mplWidget.canvas.axes
|
||||
ax.clear()
|
||||
path = unicode(QFileDialog.getOpenFileName(self, "Open file"))
|
||||
#path = "MCM42PG0_199.96K.dat"
|
||||
# TODO anaylize file (LF,MF, HF) and act accordingly
|
||||
data = N.loadtxt(path, skiprows=4)
|
||||
self.setWindowTitle(os.path.basename(path))
|
||||
numpat = re.compile('\d+\.\d+')
|
||||
try:
|
||||
Temp = None
|
||||
@ -356,93 +283,40 @@ class AppWindow(QMainWindow):
|
||||
_freq = data[mask, 0]
|
||||
_die_stor = data[mask, 1]
|
||||
_die_loss = data[mask, 2]
|
||||
# clear the figure
|
||||
ax.clear()
|
||||
#if self.data != None:
|
||||
# self.data.remove_curves()
|
||||
self.data = Data(_freq, _die_stor, _die_loss)
|
||||
self.data.set_data(_freq, _die_stor, _die_loss)
|
||||
self.data.meta["T"] = Temp
|
||||
self.data.data_curve, = ax.loglog(self.data.frequency,
|
||||
self.data.epsilon.imag,
|
||||
'b.',
|
||||
markersize=4,
|
||||
label="Data",
|
||||
animated=True)
|
||||
ax.set_xlabel("Frequency/Hz", fontsize=16)
|
||||
#ax.set_ylabel(u'\u03B5"', fontsize=16)
|
||||
ax.set_ylabel(u'e"', fontsize=16)
|
||||
self.fit_boundary.setRegion([N.log10(_freq.min()), N.log10(_freq.max())])
|
||||
|
||||
ax.autoscale(True)
|
||||
ax.set_xlim(_freq.min()/3, _freq.max()*3)
|
||||
|
||||
self.legend = ax.legend(title="T=%.2f" % Temp)
|
||||
for line in ax.get_lines():
|
||||
line.set_animated(False)
|
||||
ax.grid()
|
||||
self.mplWidget.canvas.draw()
|
||||
# weird behaviour need to draw all first, then set_animated the redraw
|
||||
for line in ax.get_lines():
|
||||
line.set_animated(True)
|
||||
self.legend.set_animated(True)
|
||||
ax.autoscale(False)
|
||||
self.mplWidget._bg_cache = self.mplWidget.canvas.copy_from_bbox(ax.bbox)
|
||||
self.updatePlot()
|
||||
|
||||
|
||||
def updatePlot(self):
|
||||
ax = self.mplWidget.canvas.axes
|
||||
nu = self.data.frequency
|
||||
fit = N.zeros(len(nu))
|
||||
for peak in self.peakBoxes.keys():
|
||||
params = peak.getParameter()
|
||||
fit += hn(params, nu)
|
||||
#fit += peak.get_data()[1]
|
||||
if self.Conductivity != None:
|
||||
print "Cond. given"
|
||||
params = self.Conductivity.getParameter()[1:]
|
||||
fit += conductivity(params, nu)
|
||||
fit += self.Conductivity.getParameter()[0] # eps static
|
||||
# clip data to axes limits
|
||||
y_min, y_max = ax.get_ylim()
|
||||
mask = (fit < y_max) & (fit > y_min)
|
||||
#mask = N.ones(len(fit), dtype="bool")
|
||||
if self.data.fitted_curve == None:
|
||||
self.data.fitted_curve, = ax.loglog(nu[mask], fit[mask],
|
||||
'k-',
|
||||
alpha=0.5,
|
||||
label="Sum",
|
||||
animated=True)
|
||||
else:
|
||||
self.data.fitted_curve.set_xdata(nu[mask])
|
||||
self.data.fitted_curve.set_ydata(fit[mask])
|
||||
# handling of fit limit bars
|
||||
# if self.mplWidget._axvlims != []:
|
||||
# [axv.remove() for axv in self.mplWidget._axvlims]
|
||||
# self.mplWidget._axvlims = []
|
||||
# if self.mplWidget._axvname != []:
|
||||
# [axvname.remove() for axvname in self.mplWidget._axvname]
|
||||
# self.mplWidget._axvname = []
|
||||
#print self.mplWidget._axvlims
|
||||
if self.mplWidget._axvlims == []:
|
||||
for i,xlim in enumerate(self.data.fit_limits[:2]):
|
||||
|
||||
self.mplWidget._axvlims.append(ax.axvline(xlim, color="k", ls="--", alpha=0.5, animated=True))
|
||||
self.mplWidget._axvname.append(ax.text(xlim, y_min*3. , "%.3g"%xlim,
|
||||
horizontalalignment='center',
|
||||
verticalalignment='center',
|
||||
animated=True) )
|
||||
else:
|
||||
for i,xlim in enumerate(self.data.fit_limits[:2]):
|
||||
self.mplWidget._axvlims[i].set_xdata(xlim)
|
||||
self.mplWidget._axvname[i].set_x(xlim)
|
||||
self.mplWidget._axvname[i].set_text("%.3g"%xlim)
|
||||
self.data.epsilon_fit = fit[:]
|
||||
self.data.data_curve.setData(self.data.frequency, self.data.epsilon.imag)
|
||||
if len(self.peakBoxes) > 0 and self.Conductivity != None:
|
||||
self.data.fitted_curve.setData(nu, fit)
|
||||
|
||||
self.mplWidget.canvas.restore_region(self.mplWidget._bg_cache)
|
||||
self.legend = ax.legend(title="T=%.2f" % (self.data.meta["T"]))
|
||||
self.legend.set_animated(True)
|
||||
for animated_artist in ax.findobj(match=lambda x: x.get_animated()):
|
||||
#print "updatePlot: animated artist:",animated_artist
|
||||
ax.draw_artist(animated_artist)
|
||||
self.mplWidget.canvas.blit(ax.bbox)
|
||||
|
||||
def sigint_handler(*args):
|
||||
"""Handler for the SIGINT signal (CTRL + C).
|
||||
"""
|
||||
sys.stderr.write('\r')
|
||||
if QMessageBox.question(None, '', "Are you sure you want to quit?",
|
||||
QMessageBox.Yes | QMessageBox.No,
|
||||
QMessageBox.No) == QMessageBox.Yes:
|
||||
QApplication.quit()
|
||||
|
||||
if __name__ == '__main__':
|
||||
signal.signal(signal.SIGINT, sigint_handler)
|
||||
|
||||
42
QDSMain.py
42
QDSMain.py
@ -2,8 +2,8 @@
|
||||
|
||||
# Form implementation generated from reading ui file 'QDSMain.ui'
|
||||
#
|
||||
# Created: Wed Jul 10 18:57:09 2013
|
||||
# by: PyQt4 UI code generator 4.10.2
|
||||
# Created: Fri Feb 21 17:15:59 2014
|
||||
# by: PyQt4 UI code generator 4.10.3
|
||||
#
|
||||
# WARNING! All changes made in this file will be lost!
|
||||
|
||||
@ -26,7 +26,7 @@ except AttributeError:
|
||||
class Ui_MainWindow(object):
|
||||
def setupUi(self, MainWindow):
|
||||
MainWindow.setObjectName(_fromUtf8("MainWindow"))
|
||||
MainWindow.resize(1228, 700)
|
||||
MainWindow.resize(956, 699)
|
||||
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Maximum, QtGui.QSizePolicy.Maximum)
|
||||
sizePolicy.setHorizontalStretch(0)
|
||||
sizePolicy.setVerticalStretch(0)
|
||||
@ -41,20 +41,11 @@ class Ui_MainWindow(object):
|
||||
self.centralwidget.setObjectName(_fromUtf8("centralwidget"))
|
||||
self.verticalLayout = QtGui.QVBoxLayout(self.centralwidget)
|
||||
self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
|
||||
self.horizontalLayout = QtGui.QHBoxLayout()
|
||||
self.horizontalLayout.setSizeConstraint(QtGui.QLayout.SetDefaultConstraint)
|
||||
self.horizontalLayout.setObjectName(_fromUtf8("horizontalLayout"))
|
||||
self.mplWidget = QtGui.QWidget(self.centralwidget)
|
||||
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Preferred)
|
||||
sizePolicy.setHorizontalStretch(0)
|
||||
sizePolicy.setVerticalStretch(0)
|
||||
sizePolicy.setHeightForWidth(self.mplWidget.sizePolicy().hasHeightForWidth())
|
||||
self.mplWidget.setSizePolicy(sizePolicy)
|
||||
self.mplWidget.setMinimumSize(QtCore.QSize(600, 400))
|
||||
self.mplWidget.setObjectName(_fromUtf8("mplWidget"))
|
||||
self.horizontalLayout.addWidget(self.mplWidget)
|
||||
self.scrollArea = QtGui.QScrollArea(self.centralwidget)
|
||||
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.Expanding)
|
||||
self.splitter = QtGui.QSplitter(self.centralwidget)
|
||||
self.splitter.setOrientation(QtCore.Qt.Horizontal)
|
||||
self.splitter.setObjectName(_fromUtf8("splitter"))
|
||||
self.scrollArea = QtGui.QScrollArea(self.splitter)
|
||||
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)
|
||||
sizePolicy.setHorizontalStretch(0)
|
||||
sizePolicy.setVerticalStretch(0)
|
||||
sizePolicy.setHeightForWidth(self.scrollArea.sizePolicy().hasHeightForWidth())
|
||||
@ -64,16 +55,20 @@ class Ui_MainWindow(object):
|
||||
self.scrollArea.setWidgetResizable(True)
|
||||
self.scrollArea.setObjectName(_fromUtf8("scrollArea"))
|
||||
self.scrollAreaWidgetContents = QtGui.QWidget()
|
||||
self.scrollAreaWidgetContents.setGeometry(QtCore.QRect(0, 0, 298, 568))
|
||||
self.scrollAreaWidgetContents.setGeometry(QtCore.QRect(0, 0, 298, 572))
|
||||
self.scrollAreaWidgetContents.setObjectName(_fromUtf8("scrollAreaWidgetContents"))
|
||||
self.verticalLayout_2 = QtGui.QVBoxLayout(self.scrollAreaWidgetContents)
|
||||
self.verticalLayout_2.setObjectName(_fromUtf8("verticalLayout_2"))
|
||||
self.scrollArea.setWidget(self.scrollAreaWidgetContents)
|
||||
self.horizontalLayout.addWidget(self.scrollArea)
|
||||
self.verticalLayout.addLayout(self.horizontalLayout)
|
||||
self.graphicsView = PlotWidget(self.splitter)
|
||||
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)
|
||||
sizePolicy.setHorizontalStretch(3)
|
||||
sizePolicy.setVerticalStretch(0)
|
||||
sizePolicy.setHeightForWidth(self.graphicsView.sizePolicy().hasHeightForWidth())
|
||||
self.graphicsView.setSizePolicy(sizePolicy)
|
||||
self.graphicsView.setObjectName(_fromUtf8("graphicsView"))
|
||||
self.verticalLayout.addWidget(self.splitter)
|
||||
MainWindow.setCentralWidget(self.centralwidget)
|
||||
self.menubar = QtGui.QMenuBar(MainWindow)
|
||||
self.menubar.setGeometry(QtCore.QRect(0, 0, 1228, 22))
|
||||
self.menubar.setGeometry(QtCore.QRect(0, 0, 956, 22))
|
||||
self.menubar.setObjectName(_fromUtf8("menubar"))
|
||||
MainWindow.setMenuBar(self.menubar)
|
||||
self.statusbar = QtGui.QStatusBar(MainWindow)
|
||||
@ -116,4 +111,5 @@ class Ui_MainWindow(object):
|
||||
self.actionSave_FitResult.setText(_translate("MainWindow", "Save Fit", None))
|
||||
self.actionSave_FitResult.setToolTip(_translate("MainWindow", "Save Fit Result", None))
|
||||
|
||||
from pyqtgraph import PlotWidget
|
||||
import images_rc
|
||||
|
||||
110
QDSMain.ui
110
QDSMain.ui
@ -6,8 +6,8 @@
|
||||
<rect>
|
||||
<x>0</x>
|
||||
<y>0</y>
|
||||
<width>1228</width>
|
||||
<height>700</height>
|
||||
<width>956</width>
|
||||
<height>699</height>
|
||||
</rect>
|
||||
</property>
|
||||
<property name="sizePolicy">
|
||||
@ -28,63 +28,52 @@
|
||||
</property>
|
||||
<layout class="QVBoxLayout" name="verticalLayout">
|
||||
<item>
|
||||
<layout class="QHBoxLayout" name="horizontalLayout">
|
||||
<property name="sizeConstraint">
|
||||
<enum>QLayout::SetDefaultConstraint</enum>
|
||||
<widget class="QSplitter" name="splitter">
|
||||
<property name="orientation">
|
||||
<enum>Qt::Horizontal</enum>
|
||||
</property>
|
||||
<item>
|
||||
<widget class="QWidget" name="mplWidget" native="true">
|
||||
<property name="sizePolicy">
|
||||
<sizepolicy hsizetype="Preferred" vsizetype="Preferred">
|
||||
<horstretch>0</horstretch>
|
||||
<verstretch>0</verstretch>
|
||||
</sizepolicy>
|
||||
</property>
|
||||
<property name="minimumSize">
|
||||
<size>
|
||||
<width>600</width>
|
||||
<height>400</height>
|
||||
</size>
|
||||
<widget class="QScrollArea" name="scrollArea">
|
||||
<property name="sizePolicy">
|
||||
<sizepolicy hsizetype="Expanding" vsizetype="Expanding">
|
||||
<horstretch>0</horstretch>
|
||||
<verstretch>0</verstretch>
|
||||
</sizepolicy>
|
||||
</property>
|
||||
<property name="minimumSize">
|
||||
<size>
|
||||
<width>300</width>
|
||||
<height>0</height>
|
||||
</size>
|
||||
</property>
|
||||
<property name="maximumSize">
|
||||
<size>
|
||||
<width>210</width>
|
||||
<height>16777215</height>
|
||||
</size>
|
||||
</property>
|
||||
<property name="widgetResizable">
|
||||
<bool>true</bool>
|
||||
</property>
|
||||
<widget class="QWidget" name="scrollAreaWidgetContents">
|
||||
<property name="geometry">
|
||||
<rect>
|
||||
<x>0</x>
|
||||
<y>0</y>
|
||||
<width>298</width>
|
||||
<height>572</height>
|
||||
</rect>
|
||||
</property>
|
||||
</widget>
|
||||
</item>
|
||||
<item>
|
||||
<widget class="QScrollArea" name="scrollArea">
|
||||
<property name="sizePolicy">
|
||||
<sizepolicy hsizetype="Fixed" vsizetype="Expanding">
|
||||
<horstretch>0</horstretch>
|
||||
<verstretch>0</verstretch>
|
||||
</sizepolicy>
|
||||
</property>
|
||||
<property name="minimumSize">
|
||||
<size>
|
||||
<width>300</width>
|
||||
<height>0</height>
|
||||
</size>
|
||||
</property>
|
||||
<property name="maximumSize">
|
||||
<size>
|
||||
<width>210</width>
|
||||
<height>16777215</height>
|
||||
</size>
|
||||
</property>
|
||||
<property name="widgetResizable">
|
||||
<bool>true</bool>
|
||||
</property>
|
||||
<widget class="QWidget" name="scrollAreaWidgetContents">
|
||||
<property name="geometry">
|
||||
<rect>
|
||||
<x>0</x>
|
||||
<y>0</y>
|
||||
<width>298</width>
|
||||
<height>568</height>
|
||||
</rect>
|
||||
</property>
|
||||
<layout class="QVBoxLayout" name="verticalLayout_2"/>
|
||||
</widget>
|
||||
</widget>
|
||||
</item>
|
||||
</layout>
|
||||
</widget>
|
||||
<widget class="PlotWidget" name="graphicsView">
|
||||
<property name="sizePolicy">
|
||||
<sizepolicy hsizetype="Expanding" vsizetype="Expanding">
|
||||
<horstretch>3</horstretch>
|
||||
<verstretch>0</verstretch>
|
||||
</sizepolicy>
|
||||
</property>
|
||||
</widget>
|
||||
</widget>
|
||||
</item>
|
||||
</layout>
|
||||
</widget>
|
||||
@ -93,7 +82,7 @@
|
||||
<rect>
|
||||
<x>0</x>
|
||||
<y>0</y>
|
||||
<width>1228</width>
|
||||
<width>956</width>
|
||||
<height>22</height>
|
||||
</rect>
|
||||
</property>
|
||||
@ -156,6 +145,13 @@
|
||||
</property>
|
||||
</action>
|
||||
</widget>
|
||||
<customwidgets>
|
||||
<customwidget>
|
||||
<class>PlotWidget</class>
|
||||
<extends>QGraphicsView</extends>
|
||||
<header>pyqtgraph</header>
|
||||
</customwidget>
|
||||
</customwidgets>
|
||||
<resources>
|
||||
<include location="icons/images.qrc"/>
|
||||
</resources>
|
||||
|
||||
136
data.py
136
data.py
@ -1,14 +1,23 @@
|
||||
from PyQt4.QtCore import QObject, pyqtSignal
|
||||
from PyQt4.QtCore import QObject, pyqtSignal, Qt
|
||||
from PyQt4.QtGui import QColor
|
||||
import numpy as N
|
||||
import PeakWidget
|
||||
import conductivityWidget
|
||||
import pyqtgraph as pg
|
||||
from PyQt4.QtCore import *
|
||||
from mathlib import id_to_color, hn
|
||||
|
||||
|
||||
class Data:
|
||||
def __init__(self, frequency, die_real, die_imag):
|
||||
def __init__(self, frequency=N.zeros(1), die_real=N.zeros(1), die_imag=N.zeros(1)):
|
||||
self.frequency = frequency
|
||||
self.epsilon = die_real + 1j * die_imag
|
||||
self.data_curve = None # mpl object
|
||||
self.fitted_curve = None # mpl object
|
||||
self.epsilon_fit = die_real*0 + 1j * die_imag*0
|
||||
myPen = pg.mkPen(width=3, color=(255,255,127))
|
||||
|
||||
self.data_curve = pg.PlotDataItem(x=[N.nan], y=[N.nan],pen=QColor(0,0,0,0), symbol='o',
|
||||
symbolBrush=(255,127,0,127))
|
||||
self.fitted_curve = pg.PlotDataItem(N.array([N.nan]), N.array([N.nan]), pen=myPen)
|
||||
self.length = len(frequency)
|
||||
self.meta = dict()
|
||||
self.fit_limits = (frequency.min(), frequency.max(), die_imag.min(), die_imag.max())
|
||||
@ -17,6 +26,14 @@ class Data:
|
||||
#self.remove_curves()
|
||||
pass
|
||||
#def set_fit_limits(self, limits=(None,None,None,None)):
|
||||
|
||||
def set_data(self,f,e_real,e_imag):
|
||||
self.frequency = f
|
||||
self.epsilon = e_real + 1j*e_imag
|
||||
self.epsilon_fit = 0*e_real + 1j*e_imag*0
|
||||
self.fit_limits = (f.min(), f.max(), e_imag.min(), e_imag.max())
|
||||
self.data_curve.setData(f,e_imag)
|
||||
|
||||
def get_data(self):
|
||||
"""
|
||||
|
||||
@ -28,22 +45,32 @@ class Data:
|
||||
|
||||
def remove_curves(self):
|
||||
print "remove data_curve"
|
||||
if self.data_curve is not None: self.data_curve.remove()
|
||||
#if self.data_curve is not None: self.data_curve.remove()
|
||||
print "remove fitted_curve"
|
||||
if self.fitted_curve is not None: self.fitted_curve.remove()
|
||||
#if self.fitted_curve is not None: self.fitted_curve.remove()
|
||||
|
||||
|
||||
class Conductivity(QObject):
|
||||
changedData = pyqtSignal()
|
||||
|
||||
def __init__(self, mpl=None):
|
||||
def __init__(self, mpl=None, limits=None):
|
||||
QObject.__init__(self)
|
||||
super(Conductivity, self)
|
||||
self.widget = conductivityWidget.ConductivityWidget()
|
||||
self.widget.changedTable.connect(self.updateData)
|
||||
self.mpl_line = None
|
||||
self.mpl_line_static = None
|
||||
myPen = pg.mkPen( style=Qt.DashLine, width=1)
|
||||
self.color=QColor("black")
|
||||
|
||||
self.mpl_line = pg.PlotDataItem(x=N.array([N.nan]), y=N.array([N.nan]), pen=myPen)
|
||||
self.mpl_line_static = pg.PlotDataItem(x=N.array([N.nan]), y=N.array([N.nan]), pen=myPen)
|
||||
self.mpl = mpl
|
||||
self.mpl.addItem(self.mpl_line)
|
||||
self.mpl.addItem(self.mpl_line_static)
|
||||
self.limits = limits
|
||||
|
||||
self.frequency = None
|
||||
self.conductivity = None
|
||||
self.epsilon_static = None
|
||||
|
||||
|
||||
def getParameter(self):
|
||||
@ -60,9 +87,7 @@ class Conductivity(QObject):
|
||||
|
||||
def updateData(self):
|
||||
# get current axis limits
|
||||
x_min, x_max = self.mpl.canvas.axes.get_xlim()
|
||||
y_min, y_max = self.mpl.canvas.axes.get_ylim()
|
||||
|
||||
x_min, x_max, y_min, y_max = self.limits
|
||||
nu = N.logspace(N.log10(x_min), N.log10(x_max), 1024)
|
||||
eps_static, sigma, sigma_N = self.getParameter()
|
||||
y = conductivity([sigma, sigma_N], nu)
|
||||
@ -71,26 +96,79 @@ class Conductivity(QObject):
|
||||
mask_static = (y_static < y_max) & (y_static > y_min)
|
||||
# clip data to axes limits
|
||||
mask = (y < y_max) & (y > y_min)
|
||||
#mask = mask_static = N.ones(1024, dtype='bool')
|
||||
if self.mpl_line == None:
|
||||
self.mpl_line, = self.mpl.canvas.axes.loglog(nu[mask], y[mask], 'k--', label="Cond.", animated=True) # peak
|
||||
else:
|
||||
self.mpl_line.set_xdata(nu[mask])
|
||||
self.mpl_line.set_ydata(y[mask])
|
||||
|
||||
if self.mpl_line_static == None:
|
||||
self.mpl_line_static, = self.mpl.canvas.axes.loglog(nu[mask_static],
|
||||
y_static[mask_static],
|
||||
'k:',
|
||||
label=r"$\epsilon_S$",
|
||||
animated=True) # peak
|
||||
else:
|
||||
self.mpl_line_static.set_xdata(nu[mask_static])
|
||||
self.mpl_line_static.set_ydata(y_static[mask_static])
|
||||
|
||||
self.frequency = nu[mask]
|
||||
self.conductivity = y[mask]
|
||||
self.epsilon_static = y_static[mask]
|
||||
self.mpl_line.setData(x=nu[mask], y=y[mask], label="Cond.")
|
||||
self.mpl_line_static.setData(x=nu[mask_static], y=y_static[mask_static])
|
||||
self.changedData.emit()
|
||||
|
||||
|
||||
def get_color(self):
|
||||
return self.color
|
||||
|
||||
def get_conductivity(self):
|
||||
return self.frequency, self.conductivity
|
||||
def get_epsilon_static(self):
|
||||
return self.frequency, self.epsilon_static
|
||||
|
||||
def conductivity(p, nu):
|
||||
c = p[0] / (2 * N.pi * nu) ** p[1]
|
||||
return c
|
||||
return c
|
||||
|
||||
|
||||
class Peak(QObject):
|
||||
changedData = pyqtSignal()
|
||||
|
||||
def __init__(self, id=None, mpl=None, limits=None):
|
||||
QObject.__init__(self)
|
||||
super(Peak, self).__init__()
|
||||
|
||||
|
||||
self.widget = PeakWidget.PeakWidget()
|
||||
self.widget.setId(id)
|
||||
self.color = id_to_color(id)
|
||||
self.widget.setColor(self.color)
|
||||
self.widget.changedTable.connect(self.updatePeak)
|
||||
self.mpl = mpl
|
||||
self.limits = limits
|
||||
|
||||
myPen = pg.mkPen( style=Qt.DashLine, width=2, color=self.color)
|
||||
self.mpl_line = pg.PlotDataItem(x=N.array([N.nan]),y=N.array([N.nan]), pen=myPen)
|
||||
self.mpl.addItem(self.mpl_line)
|
||||
self.frequency = None
|
||||
self.epsilon = None
|
||||
|
||||
def getParameter(self):
|
||||
p = self.widget.peakParameter()
|
||||
return p
|
||||
|
||||
def getFixed(self):
|
||||
p = self.widget.fixedParameter()
|
||||
return p
|
||||
|
||||
def setParameter(self, delta_eps=None, tau=None, a=None, b=None):
|
||||
self.widget.updateTable(delta_eps, tau, a, b)
|
||||
self.updatePeak()
|
||||
|
||||
def updatePeak(self):
|
||||
# get current axis limits
|
||||
# x_min, x_max = self.mpl.canvas.axes.get_xlim()
|
||||
# y_min, y_max = self.mpl.canvas.axes.get_ylim()
|
||||
x_min,x_max, y_min, y_max = self.limits
|
||||
nu = N.logspace(N.log10(x_min), N.log10(x_max), 2048)
|
||||
y = hn(self.getParameter(), nu)
|
||||
# clip data to axes limits
|
||||
mask = (y < y_max) & (y > y_min)
|
||||
y = y[mask]
|
||||
nu = nu[mask]
|
||||
self.frequency = nu[:]
|
||||
self.epsilon = y[:]
|
||||
self.mpl_line.setData(x=nu, y=y)
|
||||
self.changedData.emit()
|
||||
|
||||
def get_color(self):
|
||||
return self.color
|
||||
def get_data(self):
|
||||
return self.frequency,self.epsilon
|
||||
@ -2,8 +2,8 @@
|
||||
|
||||
# Resource object code
|
||||
#
|
||||
# Created: Mi. Jul 10 18:57:09 2013
|
||||
# by: The Resource Compiler for PyQt (Qt v4.8.4)
|
||||
# Created: Fr. Feb. 21 17:15:59 2014
|
||||
# by: The Resource Compiler for PyQt (Qt v4.8.5)
|
||||
#
|
||||
# WARNING! All changes made in this file will be lost!
|
||||
|
||||
|
||||
24
mathlib.py
24
mathlib.py
@ -3,7 +3,7 @@ import matplotlib
|
||||
import numpy as N
|
||||
from scipy import optimize as opt, optimize, odr
|
||||
#from QDS import mini_func, multi_hn
|
||||
|
||||
from PyQt4.QtGui import QColor
|
||||
__author__ = 'markusro'
|
||||
|
||||
|
||||
@ -59,7 +59,7 @@ def fit_lbfgsb(x, y, p0, fixed):
|
||||
|
||||
|
||||
def fit_odr(x, y, p0, fixed):
|
||||
dat = odr.Data(x, y, 1.0 / y)
|
||||
dat = odr.Data(x, y, 1.0 / y**2)
|
||||
mod = odr.Model(multi_hn)
|
||||
fit = odr.ODR(dat, mod, p0, ifixx=(0,), ifixb=fixed, maxit=2000)
|
||||
fit.run()
|
||||
@ -82,8 +82,16 @@ def id_to_color(id):
|
||||
|
||||
"""
|
||||
colors = ['b', 'r', 'g', 'c', 'm', 'y', 'k']
|
||||
conv = matplotlib.colors.ColorConverter()
|
||||
return conv.to_rgb(colors[id % len(colors)])
|
||||
colors = [QColor(54,22,115),
|
||||
QColor(160,16,36),
|
||||
QColor(45,142,15),
|
||||
QColor(168,149,17),
|
||||
QColor(36,10,85),
|
||||
QColor(118,8,23),
|
||||
QColor(31,105,7),
|
||||
QColor(124,109,8),
|
||||
]
|
||||
return colors[id % len(colors)]
|
||||
|
||||
|
||||
def mini_func(p, x, y):
|
||||
@ -110,4 +118,10 @@ def multi_hn(p, nu):
|
||||
e_loss += 2 * delta_eps * (1 + 2 * (om * tau) ** a * N.cos(N.pi * a / 2.) + (om * tau) ** (2. * a) ) ** (
|
||||
-b / 2.) * N.sin(b * Phi)
|
||||
#e_stor = delta_eps * (1+ 2*(om*tau)**a * N.cos(N.pi*a/2.) + (om*tau)**(2.*a) )**(-b/2.)*N.cos(b*Phi)
|
||||
return e_loss
|
||||
return e_loss
|
||||
|
||||
|
||||
def tau_peak(f, a, b):
|
||||
tau = (N.sin(N.pi * a / 2. / (b + 1)) / N.sin(N.pi * a * b / 2. / (b + 1))) ** (1 / a)
|
||||
tau /= 2 * N.pi * f
|
||||
return tau
|
||||
Loading…
Reference in New Issue
Block a user