change graphing from matlotlib to pyqtgraph

.hgignore

@@ -1,2 +1,3 @@
 syntax: glob
 *.pyc
+.idea

ConductivityGroupBox.py

@@ -2,8 +2,8 @@
 
 # Form implementation generated from reading ui file 'ConductivityGroupBox.ui'
 #
-# Created: Wed Jul 10 18:57:09 2013
+# Created: Fri Feb 21 17:15:59 2014
-#      by: PyQt4 UI code generator 4.10.2
+#      by: PyQt4 UI code generator 4.10.3
 #
 # WARNING! All changes made in this file will be lost!
 
@@ -26,7 +26,7 @@ except AttributeError:
 class Ui_ConductivityGroupBox(object):
     def setupUi(self, ConductivityGroupBox):
         ConductivityGroupBox.setObjectName(_fromUtf8("ConductivityGroupBox"))
-        ConductivityGroupBox.resize(289, 168)
+        ConductivityGroupBox.resize(255, 150)
         sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
@@ -37,7 +37,7 @@ class Ui_ConductivityGroupBox(object):
         self.gridLayout_2.setObjectName(_fromUtf8("gridLayout_2"))
         self.gridLayout = QtGui.QGridLayout()
         self.gridLayout.setSizeConstraint(QtGui.QLayout.SetFixedSize)
-        self.gridLayout.setSpacing(5)
+        self.gridLayout.setSpacing(1)
         self.gridLayout.setContentsMargins(0, 0, -1, -1)
         self.gridLayout.setObjectName(_fromUtf8("gridLayout"))
         self.checkBox_2 = QtGui.QCheckBox(ConductivityGroupBox)
@@ -73,6 +73,7 @@ class Ui_ConductivityGroupBox(object):
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.pushButton_2.sizePolicy().hasHeightForWidth())
         self.pushButton_2.setSizePolicy(sizePolicy)
+        self.pushButton_2.setAutoRepeat(True)
         self.pushButton_2.setObjectName(_fromUtf8("pushButton_2"))
         self.gridLayout.addWidget(self.pushButton_2, 1, 3, 1, 1)
         self.label_2 = QtGui.QLabel(ConductivityGroupBox)
@@ -90,6 +91,8 @@ class Ui_ConductivityGroupBox(object):
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.pushButton_5.sizePolicy().hasHeightForWidth())
         self.pushButton_5.setSizePolicy(sizePolicy)
+        self.pushButton_5.setMinimumSize(QtCore.QSize(50, 0))
+        self.pushButton_5.setAutoRepeat(True)
         self.pushButton_5.setObjectName(_fromUtf8("pushButton_5"))
         self.gridLayout.addWidget(self.pushButton_5, 3, 2, 1, 1)
         self.pushButton_6 = QtGui.QPushButton(ConductivityGroupBox)
@@ -98,6 +101,7 @@ class Ui_ConductivityGroupBox(object):
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.pushButton_6.sizePolicy().hasHeightForWidth())
         self.pushButton_6.setSizePolicy(sizePolicy)
+        self.pushButton_6.setAutoRepeat(True)
         self.pushButton_6.setObjectName(_fromUtf8("pushButton_6"))
         self.gridLayout.addWidget(self.pushButton_6, 3, 3, 1, 1)
         self.lineEdit_2 = QtGui.QLineEdit(ConductivityGroupBox)
@@ -137,6 +141,8 @@ class Ui_ConductivityGroupBox(object):
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.pushButton_3.sizePolicy().hasHeightForWidth())
         self.pushButton_3.setSizePolicy(sizePolicy)
+        self.pushButton_3.setMinimumSize(QtCore.QSize(50, 0))
+        self.pushButton_3.setAutoRepeat(True)
         self.pushButton_3.setObjectName(_fromUtf8("pushButton_3"))
         self.gridLayout.addWidget(self.pushButton_3, 2, 2, 1, 1)
         self.pushButton_4 = QtGui.QPushButton(ConductivityGroupBox)
@@ -145,6 +151,7 @@ class Ui_ConductivityGroupBox(object):
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.pushButton_4.sizePolicy().hasHeightForWidth())
         self.pushButton_4.setSizePolicy(sizePolicy)
+        self.pushButton_4.setAutoRepeat(True)
         self.pushButton_4.setObjectName(_fromUtf8("pushButton_4"))
         self.gridLayout.addWidget(self.pushButton_4, 2, 3, 1, 1)
         self.pushButton_1 = QtGui.QPushButton(ConductivityGroupBox)
@@ -153,6 +160,8 @@ class Ui_ConductivityGroupBox(object):
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.pushButton_1.sizePolicy().hasHeightForWidth())
         self.pushButton_1.setSizePolicy(sizePolicy)
+        self.pushButton_1.setMinimumSize(QtCore.QSize(50, 0))
+        self.pushButton_1.setAutoRepeat(True)
         self.pushButton_1.setAutoDefault(False)
         self.pushButton_1.setDefault(False)
         self.pushButton_1.setFlat(False)

ConductivityGroupBox.ui

@@ -6,8 +6,8 @@
    <rect>
     <x>0</x>
     <y>0</y>
-    <width>289</width>
+    <width>255</width>
-    <height>168</height>
+    <height>150</height>
    </rect>
   </property>
   <property name="sizePolicy">
@@ -41,7 +41,7 @@
       <number>0</number>
      </property>
      <property name="spacing">
-      <number>5</number>
+      <number>1</number>
      </property>
      <item row="2" column="4">
       <widget class="QCheckBox" name="checkBox_2">
@@ -106,6 +106,9 @@
        <property name="text">
         <string>+</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="2" column="0">
@@ -132,9 +135,18 @@
          <verstretch>0</verstretch>
         </sizepolicy>
        </property>
+       <property name="minimumSize">
+        <size>
+         <width>50</width>
+         <height>0</height>
+        </size>
+       </property>
        <property name="text">
         <string>-</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="3" column="3">
@@ -148,6 +160,9 @@
        <property name="text">
         <string>+</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="2" column="1">
@@ -219,9 +234,18 @@
          <verstretch>0</verstretch>
         </sizepolicy>
        </property>
+       <property name="minimumSize">
+        <size>
+         <width>50</width>
+         <height>0</height>
+        </size>
+       </property>
        <property name="text">
         <string>-</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="2" column="3">
@@ -235,6 +259,9 @@
        <property name="text">
         <string>+</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="1" column="2">
@@ -245,9 +272,18 @@
          <verstretch>0</verstretch>
         </sizepolicy>
        </property>
+       <property name="minimumSize">
+        <size>
+         <width>50</width>
+         <height>0</height>
+        </size>
+       </property>
        <property name="text">
         <string>-</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
        <property name="autoDefault">
         <bool>false</bool>
        </property>

ConductivityWidget.py

@@ -34,7 +34,7 @@ class ConductivityWidget(QGroupBox):
         self.signalMapper.mapped.connect(self.changeValues)
 
     def changeValues(self, num):
-        logstep = 1.29154967 # 10 log even steps per decade
+        logstep = 10**0.05 # 10 log even steps per decade
         linstep = 0.05
         # 0-3 down/up for d_eps and tau, respectively
         # 4-7 down, up for a, b

PeakGroupBox.py

@@ -2,8 +2,8 @@
 
 # Form implementation generated from reading ui file 'PeakGroupBox.ui'
 #
-# Created: Wed Jul 10 18:57:09 2013
+# Created: Fri Feb 21 17:15:59 2014
-#      by: PyQt4 UI code generator 4.10.2
+#      by: PyQt4 UI code generator 4.10.3
 #
 # WARNING! All changes made in this file will be lost!
 
@@ -68,6 +68,7 @@ class Ui_PeakGroupBox(object):
         sizePolicy.setHeightForWidth(self.pushButton_7.sizePolicy().hasHeightForWidth())
         self.pushButton_7.setSizePolicy(sizePolicy)
         self.pushButton_7.setMinimumSize(QtCore.QSize(56, 0))
+        self.pushButton_7.setAutoRepeat(True)
         self.pushButton_7.setObjectName(_fromUtf8("pushButton_7"))
         self.gridLayout.addWidget(self.pushButton_7, 4, 2, 1, 1)
         self.label_2 = QtGui.QLabel(PeakGroupBox)
@@ -96,6 +97,7 @@ class Ui_PeakGroupBox(object):
         self.pushButton_1.setSizePolicy(sizePolicy)
         self.pushButton_1.setMinimumSize(QtCore.QSize(56, 0))
         self.pushButton_1.setBaseSize(QtCore.QSize(0, 0))
+        self.pushButton_1.setAutoRepeat(True)
         self.pushButton_1.setAutoDefault(False)
         self.pushButton_1.setDefault(False)
         self.pushButton_1.setFlat(False)
@@ -109,6 +111,7 @@ class Ui_PeakGroupBox(object):
         sizePolicy.setHeightForWidth(self.pushButton_6.sizePolicy().hasHeightForWidth())
         self.pushButton_6.setSizePolicy(sizePolicy)
         self.pushButton_6.setMinimumSize(QtCore.QSize(56, 0))
+        self.pushButton_6.setAutoRepeat(True)
         self.pushButton_6.setObjectName(_fromUtf8("pushButton_6"))
         self.gridLayout.addWidget(self.pushButton_6, 3, 3, 1, 1)
         self.label = QtGui.QLabel(PeakGroupBox)
@@ -127,6 +130,7 @@ class Ui_PeakGroupBox(object):
         sizePolicy.setHeightForWidth(self.pushButton_5.sizePolicy().hasHeightForWidth())
         self.pushButton_5.setSizePolicy(sizePolicy)
         self.pushButton_5.setMinimumSize(QtCore.QSize(56, 0))
+        self.pushButton_5.setAutoRepeat(True)
         self.pushButton_5.setObjectName(_fromUtf8("pushButton_5"))
         self.gridLayout.addWidget(self.pushButton_5, 3, 2, 1, 1)
         self.removeButton = QtGui.QPushButton(PeakGroupBox)
@@ -146,6 +150,7 @@ class Ui_PeakGroupBox(object):
         sizePolicy.setHeightForWidth(self.pushButton_8.sizePolicy().hasHeightForWidth())
         self.pushButton_8.setSizePolicy(sizePolicy)
         self.pushButton_8.setMinimumSize(QtCore.QSize(56, 0))
+        self.pushButton_8.setAutoRepeat(True)
         self.pushButton_8.setObjectName(_fromUtf8("pushButton_8"))
         self.gridLayout.addWidget(self.pushButton_8, 4, 3, 1, 1)
         self.label_3 = QtGui.QLabel(PeakGroupBox)
@@ -165,6 +170,7 @@ class Ui_PeakGroupBox(object):
         sizePolicy.setHeightForWidth(self.pushButton_4.sizePolicy().hasHeightForWidth())
         self.pushButton_4.setSizePolicy(sizePolicy)
         self.pushButton_4.setMinimumSize(QtCore.QSize(56, 0))
+        self.pushButton_4.setAutoRepeat(True)
         self.pushButton_4.setObjectName(_fromUtf8("pushButton_4"))
         self.gridLayout.addWidget(self.pushButton_4, 2, 3, 1, 1)
         self.label_1 = QtGui.QLabel(PeakGroupBox)
@@ -207,6 +213,7 @@ class Ui_PeakGroupBox(object):
         sizePolicy.setHeightForWidth(self.pushButton_3.sizePolicy().hasHeightForWidth())
         self.pushButton_3.setSizePolicy(sizePolicy)
         self.pushButton_3.setMinimumSize(QtCore.QSize(56, 0))
+        self.pushButton_3.setAutoRepeat(True)
         self.pushButton_3.setObjectName(_fromUtf8("pushButton_3"))
         self.gridLayout.addWidget(self.pushButton_3, 2, 2, 1, 1)
         self.label_4 = QtGui.QLabel(PeakGroupBox)
@@ -229,6 +236,7 @@ class Ui_PeakGroupBox(object):
         sizePolicy.setHeightForWidth(self.pushButton_2.sizePolicy().hasHeightForWidth())
         self.pushButton_2.setSizePolicy(sizePolicy)
         self.pushButton_2.setMinimumSize(QtCore.QSize(56, 0))
+        self.pushButton_2.setAutoRepeat(True)
         self.pushButton_2.setObjectName(_fromUtf8("pushButton_2"))
         self.gridLayout.addWidget(self.pushButton_2, 1, 3, 1, 1)
         self.gridLayout.setColumnStretch(1, 1)

PeakGroupBox.ui

@@ -108,6 +108,9 @@
        <property name="text">
         <string>-</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="2" column="0">
@@ -168,6 +171,9 @@
        <property name="text">
         <string>-</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
        <property name="autoDefault">
         <bool>false</bool>
        </property>
@@ -199,6 +205,9 @@
        <property name="text">
         <string>+</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="0" column="4">
@@ -234,6 +243,9 @@
        <property name="text">
         <string>-</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="0" column="1">
@@ -275,6 +287,9 @@
        <property name="text">
         <string>+</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="3" column="0">
@@ -313,6 +328,9 @@
        <property name="text">
         <string>+</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="1" column="0">
@@ -402,6 +420,9 @@
        <property name="text">
         <string>-</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
      <item row="4" column="0">
@@ -447,6 +468,9 @@
        <property name="text">
         <string>+</string>
        </property>
+       <property name="autoRepeat">
+        <bool>true</bool>
+       </property>
       </widget>
      </item>
     </layout>

PeakWidget.py

@@ -67,9 +67,8 @@ class PeakWidget(QGroupBox):
         self.setTitle("Peak %i" % id)
 
     def setColor(self, color):
-        r, g, b = color
         palette = self.palette()
-        palette.setColor(QPalette.Foreground, QColor(r, g, b))
+        palette.setColor(QPalette.Foreground, color)
         self.setPalette(palette)
 
     def peakParameter(self):

QDS.py

@@ -7,110 +7,28 @@ import signal
 
 from PyQt4.QtCore import *
 from PyQt4.QtGui import *
+import matplotlib
 
-from mathlib import fit_anneal, fit_lbfgsb, fit_odr, hn, id_to_color
+from mathlib import fit_anneal, fit_lbfgsb, fit_odr, hn
-from matplotlibWidget import PlotWidget
 
+matplotlib.use('agg')
+
+#from matplotlibWidget import PlotWidget
+
+from matplotlib import pyplot
+from matplotlib.colors import hex2color
 #matplotlib.rc_file("default.mplrc")
 
 import numpy as N
 
 import QDSMain
-import PeakWidget
+
-from data import Data, Conductivity, conductivity
+from data import Data, Conductivity, conductivity, Peak
+import pyqtgraph as pg
+
 #import yaff
 
 
-
-def sigint_handler(*args):
-    """Handler for the SIGINT signal (CTRL + C).
-    """
-    sys.stderr.write('\r')
-    if QMessageBox.question(None, '', "Are you sure you want to quit?",
-                            QMessageBox.Yes | QMessageBox.No,
-                            QMessageBox.No) == QMessageBox.Yes:
-        QApplication.quit()
-
-
-
-
-
-def tau_peak(f, a, b):
-    tau = (N.sin(N.pi * a / 2. / (b + 1)) / N.sin(N.pi * a * b / 2. / (b + 1))) ** (1 / a)
-    tau /= 2 * N.pi * f
-    return tau
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-class Peak(QObject):
-    changedData = pyqtSignal()
-
-    def __init__(self, id=None, mpl=None):
-        QObject.__init__(self)
-        super(Peak, self).__init__()
-
-        self.color = id_to_color(id)
-        self.widget = PeakWidget.PeakWidget()
-        self.widget.setId(id)
-        self.widget.setColor(map(int, [255 * i for i in self.color]))
-        self.widget.changedTable.connect(self.updatePeak)
-        self.mpl = mpl
-        self.mpl_line = None
-
-
-    def getParameter(self):
-        p = self.widget.peakParameter()
-        return p
-
-    def getFixed(self):
-        p = self.widget.fixedParameter()
-        return p
-
-    def setParameter(self, delta_eps=None, tau=None, a=None, b=None):
-        self.widget.updateTable(delta_eps, tau, a, b)
-        self.updatePeak()
-
-    def updatePeak(self):
-        # get current axis limits 
-        x_min, x_max = self.mpl.canvas.axes.get_xlim()
-        y_min, y_max = self.mpl.canvas.axes.get_ylim()
-
-        nu = N.logspace(N.log10(x_min), N.log10(x_max), 2048)
-        y = hn(self.getParameter(), nu)
-        # clip data to axes limits
-        mask = (y < y_max) & (y > y_min)
-        y = y[mask]
-        nu = nu[mask]
-        if self.mpl_line == None:
-            self.mpl_line, = self.mpl.canvas.axes.loglog(nu, y, '--', label="Peak %i" % (self.widget.id),
-                                                         animated=True) # peak
-            self.mpl_line.set_color(self.color)
-        else:
-            self.mpl_line.set_xdata(nu)
-            self.mpl_line.set_ydata(y)
-        self.changedData.emit()
-
-
 class AppWindow(QMainWindow):
     def __init__(self, parent=None):
         super(AppWindow, self).__init__(parent)
@@ -132,6 +50,13 @@ class AppWindow(QMainWindow):
         openFile.setShortcut(QKeySequence.Open)
         openFile.triggered.connect(self.openFile)
         fileMenu.addAction(openFile)
+
+        saveFile = QAction("&Save Fit Result", self)
+        saveFile.setShortcut(QKeySequence.Save)
+        saveFile.triggered.connect(self.saveFitResult)
+        fileMenu.addAction(saveFile)
+
+
         # fitting methods
         fitMenu = self.menuBar().addMenu("Standard Fits")
         # lm
@@ -159,39 +84,41 @@ class AppWindow(QMainWindow):
         self.signalMapper.mapped.connect(self.fitData)
 
         # save fitted values
-        self.ui.actionSave_FitResult.triggered.connect(self.saveFitResult)
-        # the plot area, a matplotlib widget
-        self.mplWidget = PlotWidget(self.ui.mplWidget)
-        self.mplWidget.canvas.draw()
-        self.mplWidget.updateGeometry()
 
-        # what to do with CIDs?
+        #self.ui.actionSave_FitResult.triggered.connect(self.saveFitResult)# replaced by menu
-        self.cid = []
-        self.cid.append(self.mplWidget.canvas.mpl_connect("button_press_event", self.mpl_button_press))
-        self.cid.append(self.mplWidget.canvas.mpl_connect("pick_event", self.mpl_button_pick))
-        self.cid.append(self.mplWidget.canvas.mpl_connect("button_release_event", self.mpl_button_release))
-        #self.cid.append(self.mplWidget.canvas.mpl_connect("resize_event", self.myresizeEvent))
-        self.mplWidget.toolbar.spanSelectedTrigger.connect(self.set_fit_xlimits)
 
-    def resizeEvent(self, evt):
+        self.data = Data()
-        """resizing the main window executes this method
-        TODO: FIX RESIZEING keeping mainwindow maximised for now
-        :param evt:
-        """
-        self.mplWidget.canvas.draw()
-        self.mplWidget._bg_cache = self.mplWidget.canvas.copy_from_bbox(self.mplWidget.canvas.axes.bbox)
-        for line in self.mplWidget.canvas.axes.get_lines():
-            line.set_animated(False)
-        self.mplWidget.canvas.draw()
-        for line in self.mplWidget.canvas.axes.get_lines():
-            line.set_animated(True)
 
+        self.fit_boundary = pg.LinearRegionItem(brush=QColor(254,254,254,10))
+        self.ui.graphicsView.addItem(self.data.data_curve)
+        self.ui.graphicsView.addItem(self.data.fitted_curve)
+        self.ui.graphicsView.addItem(self.fit_boundary)
+        self.ui.graphicsView.setLogMode(x=True, y=True)
+        self.ui.graphicsView.showGrid(x=True, y=True)
+        self.ui.graphicsView.setLabel("bottom","Frequency",units="Hz")
+        self.ui.graphicsView.setLabel("left", "Dielectric loss", units="Debye")
+        self.peak_box_layout = QGridLayout()
+        self.ui.scrollAreaWidgetContents.setLayout(self.peak_box_layout)
+
+
+    def mousePressEvent(self, evt):
+        pos = evt.pos()
+        if self.ui.graphicsView.sceneRect().contains(pos):
+            # translate position to data coordinates
+            data_pos = self.ui.graphicsView.plotItem.vb.mapSceneToView(pos)
+            if self.ui.actionAdd_Peak.isChecked() and not self.ui.actionAdd_Cond.isChecked():
+                self.addPeak(data_pos)
+                self.ui.actionAdd_Peak.setChecked(False)
+            if self.ui.actionAdd_Cond.isChecked() and not self.ui.actionAdd_Peak.isChecked():
+                self.addCond(data_pos)
+                self.ui.actionAdd_Cond.setChecked(False)
 
     def saveFitResult(self):
         """
         Saving fit parameters to fitresults.log
         including temperature
         """
+        self.saveFitFigure()
         if not os.path.exists("fitresults.log"):
             f = open("fitresults.log", "w")
         else:
@@ -215,44 +142,56 @@ class AppWindow(QMainWindow):
         N.savetxt(f, N.array([pars, ]), fmt=parfmt, delimiter=" ")
         f.close()
 
+    def saveFitFigure(self):
+        fig = pyplot.Figure(figsize=(3.54, 2.75))
+        font = {'family' : 'sans serif',
+                'weight' : 'normal',
+                'size'   : 16}
+
+        matplotlib.rc('font', **font)
+        print self.data.epsilon_fit.shape, type(self.data.epsilon_fit)
+        pyplot.loglog(self.data.frequency, self.data.epsilon.imag, 'bo', markersize=4, label="Data")
+        pyplot.loglog(self.data.frequency, self.data.epsilon_fit, 'r-', lw=2, label="Fit")
+
+        for i,peak in enumerate(self.peakBoxes):
+            f,eps = peak.get_data()
+            color = hex2color(str(peak.get_color().name()))
+            pyplot.loglog(f,eps, ls="--", color=color , lw=1.5, label="Peak %i"%i)
+
+        if self.Conductivity != None:
+            f,eps = self.Conductivity.get_conductivity()
+            color = hex2color(str(self.Conductivity.get_color().name()))
+            pyplot.loglog(f,eps, ls="-.", color=color, lw=1.5, label="Cond.")
+            f,eps = self.Conductivity.get_epsilon_static()
+            pyplot.loglog(f,eps, ls=":", color=color, lw=1.5, label=r'$\eps_0$')
+
+        pyplot.legend(title="T=%.1f K"%(self.data.meta["T"]) )
+        pyplot.grid()
+        pyplot.xlabel('f/Hz')
+        pyplot.ylabel('eps"')
+        pyplot.savefig("test.png")
+        fig.clear()
+
     def set_fit_xlimits(self, xmin, xmax):
         self.data.fit_limits = (xmin, xmax, None, None)
         self.updatePlot()
 
-    def mpl_button_release(self, event):
-        ax = self.mplWidget.canvas.axes
-        if self.picked_artist:
-            if not event.inaxes: # moved outside the plot, add back to original position
-                ax.add_artist(self.picked_artist)
-            else: # we move one of the three points determinig the peak
-                self.picked_artist.set_xdata(event.xdata)
-                self.picked_artist.set_ydata(event.ydata)
-                ax.add_artist(self.picked_artist)
-                for peak in self.peakBoxes.keys():
-                    peak.updatePeak()
-                self.picked_artist = None
-            self.mplWidget.canvas.draw_idle()
-
-    def mpl_button_pick(self, event):
-        self.picked_artist = event.artist
-        event.artist.remove()
-        self.mplWidget.canvas.draw_idle()
 
     def addCond(self, pos):
         if self.Conductivity != None:
             return
         self.statusBar().showMessage("Click on graph")
-        self.Conductivity = Conductivity(mpl=self.mplWidget)
+        self.Conductivity = Conductivity(mpl=self.ui.graphicsView, limits=self.data.fit_limits)
         self.Conductivity.changedData.connect(self.updatePlot)
-        self.Conductivity.setParameter(0, 1 / (pos[0] / pos[1] / 2 / N.pi), 1.0)
+        self.Conductivity.setParameter(0, 1 / (10**pos.x() / 10**pos.y() / 2 / N.pi), 1.0)
         self.ui.scrollAreaWidgetContents.layout().addWidget(self.Conductivity.widget)
         self.Conductivity.widget.ui.removeButton.clicked.connect(self.delCond)
 
     def delCond(self):
         self.cond_param = None
         self.cond = None
-        self.Conductivity.mpl_line.remove()
+        self.ui.graphicsView.removeItem(self.Conductivity.mpl_line)
-        self.Conductivity.mpl_line_static.remove()
+        self.ui.graphicsView.removeItem(self.Conductivity.mpl_line_static)
         del self.Conductivity
         self.Conductivity = None
         self.updatePlot()
@@ -262,27 +201,27 @@ class AppWindow(QMainWindow):
         self.peakId += 1
         self.statusBar().showMessage("Select Peak Position")
 
-        peak = Peak(id=self.peakId, mpl=self.mplWidget)
+        peak = Peak(id=self.peakId, mpl=self.ui.graphicsView, limits=self.data.fit_limits)
         # connect to delPeak
         peak.widget.ui.removeButton.clicked.connect(self.delPeak)
-
-        peak.setParameter(delta_eps=pos[1], tau=1 / (2. * N.pi * pos[0]), a=1, b=1)
-
         peak.changedData.connect(self.updatePlot)
+        peak.setParameter(delta_eps=10**pos.y(), tau=1 / (10**pos.x()/2/N.pi), a=1, b=1)
 
         self.peakBoxes[peak] = None
-        for pb in self.peakBoxes.keys():
+        wdgt_num = self.peak_box_layout.rowCount()
-            self.ui.scrollAreaWidgetContents.layout().addWidget(pb.widget)
+        for i,pb in enumerate(self.peakBoxes.keys()):
-        self.updatePlot()
+            self.peak_box_layout.addWidget(pb.widget, i+wdgt_num, 0)
+        #self.ui.scrollArea.resize()
+#        self.updatePlot()
 
     def delPeak(self):
         deletePeaks = []
-        for i in xrange(self.ui.scrollAreaWidgetContents.layout().count()):
+        for i in xrange(self.peak_box_layout.count()):
             print i
 
         for i, peak in enumerate(self.peakBoxes.keys()):
             if peak.widget.isHidden():
-                peak.mpl_line.remove()
+                self.ui.graphicsView.removeItem(peak.mpl_line)
                 deletePeaks.append(peak)
         for peak in deletePeaks:
             self.peakBoxes.pop(peak)
@@ -300,6 +239,9 @@ class AppWindow(QMainWindow):
             [start_parameter.append(i) for i in pb.getParameter()]
             [fixed_params.append(i) for i in pb.getFixed()]
 
+        log10fmin, log10fmax = self.fit_boundary.getRegion()
+        xmin,xmax,ymin,ymax = self.data.fit_limits
+        self.data.fit_limits = [10**log10fmin, 10**log10fmax,ymin,ymax]
         fit_methods = [fit_odr, fit_lbfgsb, fit_anneal]
         print "StartParameter", start_parameter
         print "FixedParameter", fixed_params
@@ -318,27 +260,12 @@ class AppWindow(QMainWindow):
         #print u"\u0394\u03b5"
         self.updatePlot()
 
-    def mpl_button_press(self, event):
-        """
-        Handles the clicks on the matplotlib figure canvas
-        """
-        if self.ui.actionAdd_Peak.isChecked() and event.inaxes:
-            x, y = event.xdata, event.ydata
-            self.addPeak((x, y))
-            self.ui.actionAdd_Peak.setChecked(False)
-            self.statusBar().clear()
-        if self.ui.actionAdd_Cond.isChecked() and event.inaxes:
-            x, y = event.xdata, event.ydata
-            self.addCond((x, y))
-            self.ui.actionAdd_Cond.setChecked(False)
-            self.statusBar().clear()
-
     def openFile(self):
-        ax = self.mplWidget.canvas.axes
-        ax.clear()
         path = unicode(QFileDialog.getOpenFileName(self, "Open file"))
+        #path = "MCM42PG0_199.96K.dat"
         # TODO anaylize file (LF,MF, HF) and act accordingly
         data = N.loadtxt(path, skiprows=4)
+        self.setWindowTitle(os.path.basename(path))
         numpat = re.compile('\d+\.\d+')
         try:
             Temp = None
@@ -356,93 +283,40 @@ class AppWindow(QMainWindow):
         _freq = data[mask, 0]
         _die_stor = data[mask, 1]
         _die_loss = data[mask, 2]
-        # clear the figure
+        self.data.set_data(_freq, _die_stor, _die_loss)
-        ax.clear()
-        #if self.data != None:
-        #    self.data.remove_curves()
-        self.data = Data(_freq, _die_stor, _die_loss)
         self.data.meta["T"] = Temp
-        self.data.data_curve, = ax.loglog(self.data.frequency,
+        self.fit_boundary.setRegion([N.log10(_freq.min()), N.log10(_freq.max())])
-                                                                  self.data.epsilon.imag,
-                                                                  'b.',
-                                                                  markersize=4,
-                                                                  label="Data",
-                                                                  animated=True)
-        ax.set_xlabel("Frequency/Hz", fontsize=16)
-        #ax.set_ylabel(u'\u03B5"', fontsize=16)
-        ax.set_ylabel(u'e"', fontsize=16)
 
-        ax.autoscale(True)
-        ax.set_xlim(_freq.min()/3, _freq.max()*3)
-
-        self.legend = ax.legend(title="T=%.2f" % Temp)
-        for line in ax.get_lines():
-            line.set_animated(False)
-        ax.grid()
-        self.mplWidget.canvas.draw()
-        # weird behaviour need to draw all first, then set_animated the redraw
-        for line in ax.get_lines():
-            line.set_animated(True)
-        self.legend.set_animated(True)
-        ax.autoscale(False)
-        self.mplWidget._bg_cache = self.mplWidget.canvas.copy_from_bbox(ax.bbox)
         self.updatePlot()
 
+
     def updatePlot(self):
-        ax = self.mplWidget.canvas.axes
         nu = self.data.frequency
         fit = N.zeros(len(nu))
         for peak in self.peakBoxes.keys():
             params = peak.getParameter()
             fit += hn(params, nu)
+            #fit += peak.get_data()[1]
         if self.Conductivity != None:
             print "Cond. given"
             params = self.Conductivity.getParameter()[1:]
             fit += conductivity(params, nu)
             fit += self.Conductivity.getParameter()[0] # eps static
-            # clip data to axes limits
-        y_min, y_max = ax.get_ylim()
-        mask = (fit < y_max) & (fit > y_min)
-        #mask = N.ones(len(fit), dtype="bool")
-        if self.data.fitted_curve == None:
-            self.data.fitted_curve, = ax.loglog(nu[mask], fit[mask],
-                                                                        'k-',
-                                                                        alpha=0.5,
-                                                                        label="Sum",
-                                                                        animated=True)
-        else:
-            self.data.fitted_curve.set_xdata(nu[mask])
-            self.data.fitted_curve.set_ydata(fit[mask])
-        # handling of fit limit bars
-       # if self.mplWidget._axvlims != []:
-       #     [axv.remove() for axv in self.mplWidget._axvlims]
-       #     self.mplWidget._axvlims = []
-       # if self.mplWidget._axvname != []:
-       #     [axvname.remove() for axvname in self.mplWidget._axvname]
-       #     self.mplWidget._axvname = []
-        #print self.mplWidget._axvlims
-        if self.mplWidget._axvlims == []:
-            for i,xlim in enumerate(self.data.fit_limits[:2]):
 
-                self.mplWidget._axvlims.append(ax.axvline(xlim, color="k", ls="--", alpha=0.5, animated=True))
+        self.data.epsilon_fit = fit[:]
-                self.mplWidget._axvname.append(ax.text(xlim, y_min*3. , "%.3g"%xlim,
+        self.data.data_curve.setData(self.data.frequency, self.data.epsilon.imag)
-                                         horizontalalignment='center',
+        if len(self.peakBoxes) > 0 and self.Conductivity != None:
-                                         verticalalignment='center',
+            self.data.fitted_curve.setData(nu, fit)
-                                         animated=True) )
-        else:
-            for i,xlim in enumerate(self.data.fit_limits[:2]):
-                self.mplWidget._axvlims[i].set_xdata(xlim)
-                self.mplWidget._axvname[i].set_x(xlim)
-                self.mplWidget._axvname[i].set_text("%.3g"%xlim)
 
-        self.mplWidget.canvas.restore_region(self.mplWidget._bg_cache)
-        self.legend = ax.legend(title="T=%.2f" % (self.data.meta["T"]))
-        self.legend.set_animated(True)
-        for animated_artist in ax.findobj(match=lambda x: x.get_animated()):
-            #print "updatePlot: animated artist:",animated_artist
-            ax.draw_artist(animated_artist)
-        self.mplWidget.canvas.blit(ax.bbox)
 
+def sigint_handler(*args):
+    """Handler for the SIGINT signal (CTRL + C).
+    """
+    sys.stderr.write('\r')
+    if QMessageBox.question(None, '', "Are you sure you want to quit?",
+                            QMessageBox.Yes | QMessageBox.No,
+                            QMessageBox.No) == QMessageBox.Yes:
+        QApplication.quit()
 
 if __name__ == '__main__':
     signal.signal(signal.SIGINT, sigint_handler)

QDSMain.py

@@ -2,8 +2,8 @@
 
 # Form implementation generated from reading ui file 'QDSMain.ui'
 #
-# Created: Wed Jul 10 18:57:09 2013
+# Created: Fri Feb 21 17:15:59 2014
-#      by: PyQt4 UI code generator 4.10.2
+#      by: PyQt4 UI code generator 4.10.3
 #
 # WARNING! All changes made in this file will be lost!
 
@@ -26,7 +26,7 @@ except AttributeError:
 class Ui_MainWindow(object):
     def setupUi(self, MainWindow):
         MainWindow.setObjectName(_fromUtf8("MainWindow"))
-        MainWindow.resize(1228, 700)
+        MainWindow.resize(956, 699)
         sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Maximum, QtGui.QSizePolicy.Maximum)
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
@@ -41,20 +41,11 @@ class Ui_MainWindow(object):
         self.centralwidget.setObjectName(_fromUtf8("centralwidget"))
         self.verticalLayout = QtGui.QVBoxLayout(self.centralwidget)
         self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
-        self.horizontalLayout = QtGui.QHBoxLayout()
+        self.splitter = QtGui.QSplitter(self.centralwidget)
-        self.horizontalLayout.setSizeConstraint(QtGui.QLayout.SetDefaultConstraint)
+        self.splitter.setOrientation(QtCore.Qt.Horizontal)
-        self.horizontalLayout.setObjectName(_fromUtf8("horizontalLayout"))
+        self.splitter.setObjectName(_fromUtf8("splitter"))
-        self.mplWidget = QtGui.QWidget(self.centralwidget)
+        self.scrollArea = QtGui.QScrollArea(self.splitter)
-        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Preferred)
+        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)
-        sizePolicy.setHorizontalStretch(0)
-        sizePolicy.setVerticalStretch(0)
-        sizePolicy.setHeightForWidth(self.mplWidget.sizePolicy().hasHeightForWidth())
-        self.mplWidget.setSizePolicy(sizePolicy)
-        self.mplWidget.setMinimumSize(QtCore.QSize(600, 400))
-        self.mplWidget.setObjectName(_fromUtf8("mplWidget"))
-        self.horizontalLayout.addWidget(self.mplWidget)
-        self.scrollArea = QtGui.QScrollArea(self.centralwidget)
-        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.Expanding)
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.scrollArea.sizePolicy().hasHeightForWidth())
@@ -64,16 +55,20 @@ class Ui_MainWindow(object):
         self.scrollArea.setWidgetResizable(True)
         self.scrollArea.setObjectName(_fromUtf8("scrollArea"))
         self.scrollAreaWidgetContents = QtGui.QWidget()
-        self.scrollAreaWidgetContents.setGeometry(QtCore.QRect(0, 0, 298, 568))
+        self.scrollAreaWidgetContents.setGeometry(QtCore.QRect(0, 0, 298, 572))
         self.scrollAreaWidgetContents.setObjectName(_fromUtf8("scrollAreaWidgetContents"))
-        self.verticalLayout_2 = QtGui.QVBoxLayout(self.scrollAreaWidgetContents)
-        self.verticalLayout_2.setObjectName(_fromUtf8("verticalLayout_2"))
         self.scrollArea.setWidget(self.scrollAreaWidgetContents)
-        self.horizontalLayout.addWidget(self.scrollArea)
+        self.graphicsView = PlotWidget(self.splitter)
-        self.verticalLayout.addLayout(self.horizontalLayout)
+        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)
+        sizePolicy.setHorizontalStretch(3)
+        sizePolicy.setVerticalStretch(0)
+        sizePolicy.setHeightForWidth(self.graphicsView.sizePolicy().hasHeightForWidth())
+        self.graphicsView.setSizePolicy(sizePolicy)
+        self.graphicsView.setObjectName(_fromUtf8("graphicsView"))
+        self.verticalLayout.addWidget(self.splitter)
         MainWindow.setCentralWidget(self.centralwidget)
         self.menubar = QtGui.QMenuBar(MainWindow)
-        self.menubar.setGeometry(QtCore.QRect(0, 0, 1228, 22))
+        self.menubar.setGeometry(QtCore.QRect(0, 0, 956, 22))
         self.menubar.setObjectName(_fromUtf8("menubar"))
         MainWindow.setMenuBar(self.menubar)
         self.statusbar = QtGui.QStatusBar(MainWindow)
@@ -116,4 +111,5 @@ class Ui_MainWindow(object):
         self.actionSave_FitResult.setText(_translate("MainWindow", "Save Fit", None))
         self.actionSave_FitResult.setToolTip(_translate("MainWindow", "Save Fit Result", None))
 
+from pyqtgraph import PlotWidget
 import images_rc

QDSMain.ui

@@ -6,8 +6,8 @@
    <rect>
     <x>0</x>
     <y>0</y>
-    <width>1228</width>
+    <width>956</width>
-    <height>700</height>
+    <height>699</height>
    </rect>
   </property>
   <property name="sizePolicy">
@@ -28,63 +28,52 @@
    </property>
    <layout class="QVBoxLayout" name="verticalLayout">
     <item>
-     <layout class="QHBoxLayout" name="horizontalLayout">
+     <widget class="QSplitter" name="splitter">
-      <property name="sizeConstraint">
+      <property name="orientation">
-       <enum>QLayout::SetDefaultConstraint</enum>
+       <enum>Qt::Horizontal</enum>
       </property>
-      <item>
+      <widget class="QScrollArea" name="scrollArea">
-       <widget class="QWidget" name="mplWidget" native="true">
+       <property name="sizePolicy">
-        <property name="sizePolicy">
+        <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
-         <sizepolicy hsizetype="Preferred" vsizetype="Preferred">
+         <horstretch>0</horstretch>
-          <horstretch>0</horstretch>
+         <verstretch>0</verstretch>
-          <verstretch>0</verstretch>
+        </sizepolicy>
-         </sizepolicy>
+       </property>
-        </property>
+       <property name="minimumSize">
-        <property name="minimumSize">
+        <size>
-         <size>
+         <width>300</width>
-          <width>600</width>
+         <height>0</height>
-          <height>400</height>
+        </size>
-         </size>
+       </property>
+       <property name="maximumSize">
+        <size>
+         <width>210</width>
+         <height>16777215</height>
+        </size>
+       </property>
+       <property name="widgetResizable">
+        <bool>true</bool>
+       </property>
+       <widget class="QWidget" name="scrollAreaWidgetContents">
+        <property name="geometry">
+         <rect>
+          <x>0</x>
+          <y>0</y>
+          <width>298</width>
+          <height>572</height>
+         </rect>
         </property>
        </widget>
-      </item>
+      </widget>
-      <item>
+      <widget class="PlotWidget" name="graphicsView">
-       <widget class="QScrollArea" name="scrollArea">
+       <property name="sizePolicy">
-        <property name="sizePolicy">
+        <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
-         <sizepolicy hsizetype="Fixed" vsizetype="Expanding">
+         <horstretch>3</horstretch>
-          <horstretch>0</horstretch>
+         <verstretch>0</verstretch>
-          <verstretch>0</verstretch>
+        </sizepolicy>
-         </sizepolicy>
+       </property>
-        </property>
+      </widget>
-        <property name="minimumSize">
+     </widget>
-         <size>
-          <width>300</width>
-          <height>0</height>
-         </size>
-        </property>
-        <property name="maximumSize">
-         <size>
-          <width>210</width>
-          <height>16777215</height>
-         </size>
-        </property>
-        <property name="widgetResizable">
-         <bool>true</bool>
-        </property>
-        <widget class="QWidget" name="scrollAreaWidgetContents">
-         <property name="geometry">
-          <rect>
-           <x>0</x>
-           <y>0</y>
-           <width>298</width>
-           <height>568</height>
-          </rect>
-         </property>
-         <layout class="QVBoxLayout" name="verticalLayout_2"/>
-        </widget>
-       </widget>
-      </item>
-     </layout>
     </item>
    </layout>
   </widget>
@@ -93,7 +82,7 @@
     <rect>
      <x>0</x>
      <y>0</y>
-     <width>1228</width>
+     <width>956</width>
      <height>22</height>
     </rect>
    </property>
@@ -156,6 +145,13 @@
    </property>
   </action>
  </widget>
+ <customwidgets>
+  <customwidget>
+   <class>PlotWidget</class>
+   <extends>QGraphicsView</extends>
+   <header>pyqtgraph</header>
+  </customwidget>
+ </customwidgets>
  <resources>
   <include location="icons/images.qrc"/>
  </resources>

data.py

@@ -1,14 +1,23 @@
-from PyQt4.QtCore import QObject, pyqtSignal
+from PyQt4.QtCore import QObject, pyqtSignal, Qt
+from PyQt4.QtGui import QColor
 import numpy as N
+import PeakWidget
 import conductivityWidget
+import pyqtgraph as pg
+from PyQt4.QtCore import *
+from mathlib import id_to_color, hn
 
 
 class Data:
-    def __init__(self, frequency, die_real, die_imag):
+    def __init__(self, frequency=N.zeros(1), die_real=N.zeros(1), die_imag=N.zeros(1)):
         self.frequency = frequency
         self.epsilon = die_real + 1j * die_imag
-        self.data_curve = None # mpl object
+        self.epsilon_fit = die_real*0 + 1j * die_imag*0
-        self.fitted_curve = None # mpl object
+        myPen = pg.mkPen(width=3, color=(255,255,127))
+
+        self.data_curve = pg.PlotDataItem(x=[N.nan], y=[N.nan],pen=QColor(0,0,0,0), symbol='o',
+                                          symbolBrush=(255,127,0,127))
+        self.fitted_curve = pg.PlotDataItem(N.array([N.nan]), N.array([N.nan]), pen=myPen)
         self.length = len(frequency)
         self.meta = dict()
         self.fit_limits = (frequency.min(), frequency.max(), die_imag.min(), die_imag.max())
@@ -17,6 +26,14 @@ class Data:
         #self.remove_curves()
         pass
     #def set_fit_limits(self, limits=(None,None,None,None)):
+
+    def set_data(self,f,e_real,e_imag):
+        self.frequency = f
+        self.epsilon = e_real + 1j*e_imag
+        self.epsilon_fit  =  0*e_real + 1j*e_imag*0
+        self.fit_limits = (f.min(), f.max(), e_imag.min(), e_imag.max())
+        self.data_curve.setData(f,e_imag)
+
     def get_data(self):
         """
         
@@ -28,22 +45,32 @@ class Data:
 
     def remove_curves(self):
         print "remove data_curve"
-        if self.data_curve is not None: self.data_curve.remove()
+        #if self.data_curve is not None: self.data_curve.remove()
         print "remove fitted_curve"
-        if self.fitted_curve is not None: self.fitted_curve.remove()
+        #if self.fitted_curve is not None: self.fitted_curve.remove()
 
 
 class Conductivity(QObject):
     changedData = pyqtSignal()
 
-    def __init__(self, mpl=None):
+    def __init__(self, mpl=None, limits=None):
         QObject.__init__(self)
         super(Conductivity, self)
         self.widget = conductivityWidget.ConductivityWidget()
         self.widget.changedTable.connect(self.updateData)
-        self.mpl_line = None
+        myPen = pg.mkPen( style=Qt.DashLine, width=1)
-        self.mpl_line_static = None
+        self.color=QColor("black")
+
+        self.mpl_line = pg.PlotDataItem(x=N.array([N.nan]), y=N.array([N.nan]), pen=myPen)
+        self.mpl_line_static = pg.PlotDataItem(x=N.array([N.nan]), y=N.array([N.nan]), pen=myPen)
         self.mpl = mpl
+        self.mpl.addItem(self.mpl_line)
+        self.mpl.addItem(self.mpl_line_static)
+        self.limits = limits
+
+        self.frequency = None
+        self.conductivity = None
+        self.epsilon_static = None
 
 
     def getParameter(self):
@@ -60,9 +87,7 @@ class Conductivity(QObject):
 
     def updateData(self):
         # get current axis limits
-        x_min, x_max = self.mpl.canvas.axes.get_xlim()
+        x_min, x_max, y_min, y_max = self.limits
-        y_min, y_max = self.mpl.canvas.axes.get_ylim()
-
         nu = N.logspace(N.log10(x_min), N.log10(x_max), 1024)
         eps_static, sigma, sigma_N = self.getParameter()
         y = conductivity([sigma, sigma_N], nu)
@@ -71,26 +96,79 @@ class Conductivity(QObject):
         mask_static = (y_static < y_max) & (y_static > y_min)
         # clip data to axes limits
         mask = (y < y_max) & (y > y_min)
-        #mask = mask_static = N.ones(1024, dtype='bool')
-        if self.mpl_line == None:
-            self.mpl_line, = self.mpl.canvas.axes.loglog(nu[mask], y[mask], 'k--', label="Cond.", animated=True) # peak
-        else:
-            self.mpl_line.set_xdata(nu[mask])
-            self.mpl_line.set_ydata(y[mask])
-
-        if self.mpl_line_static == None:
-            self.mpl_line_static, = self.mpl.canvas.axes.loglog(nu[mask_static],
-                                                                y_static[mask_static],
-                                                                'k:',
-                                                                label=r"$\epsilon_S$",
-                                                                animated=True) # peak
-        else:
-            self.mpl_line_static.set_xdata(nu[mask_static])
-            self.mpl_line_static.set_ydata(y_static[mask_static])
 
+        self.frequency = nu[mask]
+        self.conductivity = y[mask]
+        self.epsilon_static = y_static[mask]
+        self.mpl_line.setData(x=nu[mask], y=y[mask], label="Cond.")
+        self.mpl_line_static.setData(x=nu[mask_static], y=y_static[mask_static])
         self.changedData.emit()
 
 
+    def get_color(self):
+        return self.color
+
+    def get_conductivity(self):
+        return self.frequency, self.conductivity
+    def get_epsilon_static(self):
+        return self.frequency, self.epsilon_static
+
 def conductivity(p, nu):
     c = p[0] / (2 * N.pi * nu) ** p[1]
     return c
+
+
+class Peak(QObject):
+    changedData = pyqtSignal()
+
+    def __init__(self, id=None, mpl=None, limits=None):
+        QObject.__init__(self)
+        super(Peak, self).__init__()
+
+
+        self.widget = PeakWidget.PeakWidget()
+        self.widget.setId(id)
+        self.color = id_to_color(id)
+        self.widget.setColor(self.color)
+        self.widget.changedTable.connect(self.updatePeak)
+        self.mpl = mpl
+        self.limits = limits
+
+        myPen = pg.mkPen( style=Qt.DashLine, width=2, color=self.color)
+        self.mpl_line = pg.PlotDataItem(x=N.array([N.nan]),y=N.array([N.nan]), pen=myPen)
+        self.mpl.addItem(self.mpl_line)
+        self.frequency = None
+        self.epsilon = None
+
+    def getParameter(self):
+        p = self.widget.peakParameter()
+        return p
+
+    def getFixed(self):
+        p = self.widget.fixedParameter()
+        return p
+
+    def setParameter(self, delta_eps=None, tau=None, a=None, b=None):
+        self.widget.updateTable(delta_eps, tau, a, b)
+        self.updatePeak()
+
+    def updatePeak(self):
+        # get current axis limits
+#        x_min, x_max = self.mpl.canvas.axes.get_xlim()
+#        y_min, y_max = self.mpl.canvas.axes.get_ylim()
+        x_min,x_max, y_min, y_max = self.limits
+        nu = N.logspace(N.log10(x_min), N.log10(x_max), 2048)
+        y = hn(self.getParameter(), nu)
+        # clip data to axes limits
+        mask = (y < y_max) & (y > y_min)
+        y = y[mask]
+        nu = nu[mask]
+        self.frequency = nu[:]
+        self.epsilon = y[:]
+        self.mpl_line.setData(x=nu, y=y)
+        self.changedData.emit()
+
+    def get_color(self):
+        return self.color
+    def get_data(self):
+        return self.frequency,self.epsilon

images_rc.py

@@ -2,8 +2,8 @@
 
 # Resource object code
 #
-# Created: Mi. Jul 10 18:57:09 2013
+# Created: Fr. Feb. 21 17:15:59 2014
-#      by: The Resource Compiler for PyQt (Qt v4.8.4)
+#      by: The Resource Compiler for PyQt (Qt v4.8.5)
 #
 # WARNING! All changes made in this file will be lost!
 

mathlib.py

@@ -3,7 +3,7 @@ import matplotlib
 import numpy as N
 from scipy import optimize as opt, optimize, odr
 #from QDS import mini_func, multi_hn
-
+from PyQt4.QtGui import QColor
 __author__ = 'markusro'
 
 
@@ -59,7 +59,7 @@ def fit_lbfgsb(x, y, p0, fixed):
 
 
 def fit_odr(x, y, p0, fixed):
-    dat = odr.Data(x, y, 1.0 / y)
+    dat = odr.Data(x, y, 1.0 / y**2)
     mod = odr.Model(multi_hn)
     fit = odr.ODR(dat, mod, p0, ifixx=(0,), ifixb=fixed, maxit=2000)
     fit.run()
@@ -82,8 +82,16 @@ def id_to_color(id):
 
     """
     colors = ['b', 'r', 'g', 'c', 'm', 'y', 'k']
-    conv = matplotlib.colors.ColorConverter()
+    colors = [QColor(54,22,115),
-    return conv.to_rgb(colors[id % len(colors)])
+              QColor(160,16,36),
+              QColor(45,142,15),
+              QColor(168,149,17),
+              QColor(36,10,85),
+              QColor(118,8,23),
+              QColor(31,105,7),
+              QColor(124,109,8),
+              ]
+    return colors[id % len(colors)]
 
 
 def mini_func(p, x, y):
@@ -111,3 +119,9 @@ def multi_hn(p, nu):
         -b / 2.) * N.sin(b * Phi)
         #e_stor = delta_eps * (1+ 2*(om*tau)**a * N.cos(N.pi*a/2.) + (om*tau)**(2.*a) )**(-b/2.)*N.cos(b*Phi)
     return e_loss
+
+
+def tau_peak(f, a, b):
+    tau = (N.sin(N.pi * a / 2. / (b + 1)) / N.sin(N.pi * a * b / 2. / (b + 1))) ** (1 / a)
+    tau /= 2 * N.pi * f
+    return tau